g50502.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015983.1:480881-485890[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0032 19 8.2 0.0 21 48 95 122 83 126 0.83 2 19 0.0088 52 6.8 0.1 21 52 123 154 119 156 0.87 3 19 0.9 5.3e+03 0.3 0.2 21 43 151 173 147 178 0.76 4 19 1.3 7.8e+03 -0.2 0.0 22 46 180 204 171 209 0.82 5 19 0.91 5.4e+03 0.3 0.1 26 46 212 232 205 235 0.86 6 19 1.9 1.1e+04 -0.7 0.0 26 46 240 260 234 266 0.81 7 19 0.0036 22 8.0 0.0 21 44 263 286 255 290 0.89 8 19 1.5 9.2e+03 -0.4 0.1 23 44 293 314 289 318 0.84 9 19 0.00097 5.8 9.8 0.1 21 52 319 350 315 352 0.87 10 19 0.91 5.4e+03 0.3 0.2 21 43 347 369 342 380 0.73 11 19 0.092 5.5e+02 3.5 0.1 21 46 403 428 398 430 0.89 12 19 0.14 8.3e+02 2.9 0.2 21 45 457 481 449 488 0.86 13 19 0.053 3.2e+02 4.3 0.0 22 46 486 510 483 512 0.87 14 19 1.3 7.5e+03 -0.1 0.0 24 46 516 538 510 541 0.86 15 19 0.00024 1.4 11.8 0.0 21 45 541 565 537 574 0.90 16 19 6 3.6e+04 -2.3 0.1 23 32 571 580 566 594 0.66 17 19 7.8e-05 0.46 13.3 0.3 20 48 596 624 578 628 0.82 18 19 0.013 79 6.2 0.2 21 50 625 653 621 656 0.86 19 19 1.9 1.1e+04 -0.7 0.1 22 45 654 677 653 680 0.78
Sequence Information
- Coding Sequence
- ATGGGTTTTTCGTGTGAAGATATAAAATCTGAGCCAAGTAATACATTAAAACAAGAAGATGATGGAAGTAGTCAATTGAACCCGTATTTAACTGACGTCATGAAAGTGAACACCACAGAAAAACCTTTTATATCAGAAATTGTTTCTGAACCGTCTACAACAAAGCCTGTTTTAAAAACACGTGAAAGAATGCTCAACAGGAAAAGACGTTTAAGGTGTAAAATATGCAACCAACAGTTTTTACAGCATTCCAGATTAAAAGAACATAGtaaagtgcacactggagaaaaaccatttaCATGTAAAATTTGCACGAAACAATTTTCAAGGATTTATGATTTAAATAGACATTTAACAgttcatactggtgaaaaaccatttgtgTGTGAAGTTTGCAGCAACCAGTTTTTAACGAGTTCTCGTTTAAAAAGACATTTAAGAGTTCATACTGGCGAAAAACCATTTGCATGTGAAATATGCAACAAAAAATTTTCACGAAGGTATCGTTTAAAAAAACATACAGCATCACATTCTGTAGAAAAACTTTTTGCATGTGAagtttgcaccaaacagttttcacgGAGTTCCGAATTAAAAGTGCATTTAAGAGTTCACAATGGAGAAACCCTTTTTGCATGTGAAATATGCAACAAACAGTTTTCACGGAGCTCCGAATTAAAAGTGCATTTAAGGGTTCACACTGGAGAACATCTATTTGTATGTAAAATATGCAACAAACAGTTTTTAAGGAGTGCtgaattaaaaatacatttaagGACTCATACCGGTGAAAAACCATTTTCATGTGAAATATGCAACAAAGAGTTTTCGCAAAGTTCTAATTTAAGCGCACATATGGTAGTACATTCTGGAGAAAGACagtttaaatgtgaaatttgcgcCAAACAGTTTTCACGGAGCCACCACTTAAAAGTGCATTTAAGAGGTCACACTGGAGAAAACCCATTTAAATGTGAAATCTGCATGAAACAATTTTCAAGGAGttatgatttaaaaagacatttaagagtccatactggtgaaaaaccatttgcgTGTGAAATATGCAACAAACAGTTTTCACGGAGGATTCGTTTAAAAGAACATACAGTATTACATTCTACAGAAAAACGTTTTGCCTGTGACATTTGCACTGAACAGTTTTCAATGAAATCCGAATTAAACATACATTTACGAGTTCATACTGGGGAAAACCCAGTTGCATGTGAAATGTGCAACAAACAATTTTCAAGAATTTATGAACTAAAGAGACATTTAAGAGTGCACTCTGGCGAAATTTCATGTGAAATTTGCAAGAAGCAATTTTCCAGCAATTATGAGTTAAAAAGACATTCAGGAgttcatactggtgaaaaaccatttgcaTGTGAAATATGCAACAAACAGTTTTCACAAAGATATCGTTTAAAAGAACATATAGTGGTACATTCTGTAGAAAAACGTTTTGCATGTGAAATATGCAACGAACAGTTTTCACAGAGTTCCGATTTAAAAGTGCATTTAAAAGTTCACACTGAAGAAAACCTATTTACGTGTGAAACTTGCATGAAACAATTTTCAAAGAGTTATGAATTAAAAGTACATTTAAGAGTTCATACCGGTGAAAAACCATTTACATGTGAAATATGCAACAAACAGTTTGCACAAAGTTCTAATTTAAACGCACATATGACAGTGCATTCTGAAGAAAGACTATTTACATGTGAAATTTGCAAAAAACAGTTTTCACGGCATTGTTACTTAAAAGAACATgcaagagtgcacactggagaaaaaccatttaCATGTGAAATTTGCACGAAACAATTCTCAAGAAGTTATGATTTAAAAAGGCATTTAAGAGTTCATTCCGGTGAAAAACCATTTGCATGTGAAATATGCAAAAAACAGTTTTCACGAAGCTCTCGTTTAAAAGAACATACATTATTACATTTTGCAGAAAAACGTTTTACATGTGAAATTTGCACTGAACAGTTTTCGATGAGATCCGAATTAAAAATGCATTTAAGAGTGCATACTGAGGAAAACCAGTTACCTGTGAAATTTGCCTGA
- Protein Sequence
- MGFSCEDIKSEPSNTLKQEDDGSSQLNPYLTDVMKVNTTEKPFISEIVSEPSTTKPVLKTRERMLNRKRRLRCKICNQQFLQHSRLKEHSKVHTGEKPFTCKICTKQFSRIYDLNRHLTVHTGEKPFVCEVCSNQFLTSSRLKRHLRVHTGEKPFACEICNKKFSRRYRLKKHTASHSVEKLFACEVCTKQFSRSSELKVHLRVHNGETLFACEICNKQFSRSSELKVHLRVHTGEHLFVCKICNKQFLRSAELKIHLRTHTGEKPFSCEICNKEFSQSSNLSAHMVVHSGERQFKCEICAKQFSRSHHLKVHLRGHTGENPFKCEICMKQFSRSYDLKRHLRVHTGEKPFACEICNKQFSRRIRLKEHTVLHSTEKRFACDICTEQFSMKSELNIHLRVHTGENPVACEMCNKQFSRIYELKRHLRVHSGEISCEICKKQFSSNYELKRHSGVHTGEKPFACEICNKQFSQRYRLKEHIVVHSVEKRFACEICNEQFSQSSDLKVHLKVHTEENLFTCETCMKQFSKSYELKVHLRVHTGEKPFTCEICNKQFAQSSNLNAHMTVHSEERLFTCEICKKQFSRHCYLKEHARVHTGEKPFTCEICTKQFSRSYDLKRHLRVHSGEKPFACEICKKQFSRSSRLKEHTLLHFAEKRFTCEICTEQFSMRSELKMHLRVHTEENQLPVKFA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437206; iTF_00437270;
- 90% Identity
- iTF_00437206; iTF_00437270;
- 80% Identity
- iTF_00437206; iTF_00437270;