g50502.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015983.1:480881-485890[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.49 9.5e+02 2.6 1.4 16 38 70 89 63 91 0.78 2 21 0.3 5.8e+02 3.3 8.0 14 40 96 147 84 150 0.70 3 21 0.084 1.6e+02 5.1 1.8 18 29 156 167 148 177 0.78 4 21 0.0073 14 8.5 0.9 10 40 177 203 169 206 0.77 5 21 0.00059 1.2 12.0 0.5 16 40 210 231 204 237 0.86 6 21 0.017 34 7.3 1.3 17 41 239 260 232 262 0.81 7 21 0.00036 0.7 12.7 0.1 18 40 268 287 262 294 0.88 8 21 0.0075 15 8.4 1.9 17 40 295 315 289 318 0.84 9 21 0.00022 0.43 13.3 0.5 17 40 323 343 317 346 0.86 10 21 0.055 1.1e+02 5.7 2.0 17 29 351 363 339 375 0.75 11 21 0.17 3.2e+02 4.1 0.4 9 33 372 392 364 402 0.74 12 21 0.0014 2.8 10.8 0.6 14 40 404 427 397 430 0.86 13 21 0.046 90 5.9 1.1 15 29 431 445 427 456 0.78 14 21 0.065 1.3e+02 5.4 0.6 17 39 461 480 447 484 0.76 15 21 0.02 38 7.1 0.2 14 40 486 509 476 512 0.83 16 21 0.028 55 6.6 0.7 12 39 512 536 508 540 0.76 17 21 0.0011 2.1 11.1 0.6 15 40 543 565 533 569 0.84 18 21 0.033 64 6.4 1.6 17 29 573 585 566 592 0.84 19 21 0.0013 2.5 10.9 1.5 13 40 597 621 586 624 0.80 20 21 0.0031 6 9.7 0.5 18 38 630 647 623 649 0.87 21 21 0.063 1.2e+02 5.5 0.5 14 40 654 677 648 680 0.85
Sequence Information
- Coding Sequence
- ATGGGTTTTTCGTGTGAAGATATAAAATCTGAGCCAAGTAATACATTAAAACAAGAAGATGATGGAAGTAGTCAATTGAACCCGTATTTAACTGACGTCATGAAAGTGAACACCACAGAAAAACCTTTTATATCAGAAATTGTTTCTGAACCGTCTACAACAAAGCCTGTTTTAAAAACACGTGAAAGAATGCTCAACAGGAAAAGACGTTTAAGGTGTAAAATATGCAACCAACAGTTTTTACAGCATTCCAGATTAAAAGAACATAGtaaagtgcacactggagaaaaaccatttaCATGTAAAATTTGCACGAAACAATTTTCAAGGATTTATGATTTAAATAGACATTTAACAgttcatactggtgaaaaaccatttgtgTGTGAAGTTTGCAGCAACCAGTTTTTAACGAGTTCTCGTTTAAAAAGACATTTAAGAGTTCATACTGGCGAAAAACCATTTGCATGTGAAATATGCAACAAAAAATTTTCACGAAGGTATCGTTTAAAAAAACATACAGCATCACATTCTGTAGAAAAACTTTTTGCATGTGAagtttgcaccaaacagttttcacgGAGTTCCGAATTAAAAGTGCATTTAAGAGTTCACAATGGAGAAACCCTTTTTGCATGTGAAATATGCAACAAACAGTTTTCACGGAGCTCCGAATTAAAAGTGCATTTAAGGGTTCACACTGGAGAACATCTATTTGTATGTAAAATATGCAACAAACAGTTTTTAAGGAGTGCtgaattaaaaatacatttaagGACTCATACCGGTGAAAAACCATTTTCATGTGAAATATGCAACAAAGAGTTTTCGCAAAGTTCTAATTTAAGCGCACATATGGTAGTACATTCTGGAGAAAGACagtttaaatgtgaaatttgcgcCAAACAGTTTTCACGGAGCCACCACTTAAAAGTGCATTTAAGAGGTCACACTGGAGAAAACCCATTTAAATGTGAAATCTGCATGAAACAATTTTCAAGGAGttatgatttaaaaagacatttaagagtccatactggtgaaaaaccatttgcgTGTGAAATATGCAACAAACAGTTTTCACGGAGGATTCGTTTAAAAGAACATACAGTATTACATTCTACAGAAAAACGTTTTGCCTGTGACATTTGCACTGAACAGTTTTCAATGAAATCCGAATTAAACATACATTTACGAGTTCATACTGGGGAAAACCCAGTTGCATGTGAAATGTGCAACAAACAATTTTCAAGAATTTATGAACTAAAGAGACATTTAAGAGTGCACTCTGGCGAAATTTCATGTGAAATTTGCAAGAAGCAATTTTCCAGCAATTATGAGTTAAAAAGACATTCAGGAgttcatactggtgaaaaaccatttgcaTGTGAAATATGCAACAAACAGTTTTCACAAAGATATCGTTTAAAAGAACATATAGTGGTACATTCTGTAGAAAAACGTTTTGCATGTGAAATATGCAACGAACAGTTTTCACAGAGTTCCGATTTAAAAGTGCATTTAAAAGTTCACACTGAAGAAAACCTATTTACGTGTGAAACTTGCATGAAACAATTTTCAAAGAGTTATGAATTAAAAGTACATTTAAGAGTTCATACCGGTGAAAAACCATTTACATGTGAAATATGCAACAAACAGTTTGCACAAAGTTCTAATTTAAACGCACATATGACAGTGCATTCTGAAGAAAGACTATTTACATGTGAAATTTGCAAAAAACAGTTTTCACGGCATTGTTACTTAAAAGAACATgcaagagtgcacactggagaaaaaccatttaCATGTGAAATTTGCACGAAACAATTCTCAAGAAGTTATGATTTAAAAAGGCATTTAAGAGTTCATTCCGGTGAAAAACCATTTGCATGTGAAATATGCAAAAAACAGTTTTCACGAAGCTCTCGTTTAAAAGAACATACATTATTACATTTTGCAGAAAAACGTTTTACATGTGAAATTTGCACTGAACAGTTTTCGATGAGATCCGAATTAAAAATGCATTTAAGAGTGCATACTGAGGAAAACCAGTTACCTGTGAAATTTGCCTGA
- Protein Sequence
- MGFSCEDIKSEPSNTLKQEDDGSSQLNPYLTDVMKVNTTEKPFISEIVSEPSTTKPVLKTRERMLNRKRRLRCKICNQQFLQHSRLKEHSKVHTGEKPFTCKICTKQFSRIYDLNRHLTVHTGEKPFVCEVCSNQFLTSSRLKRHLRVHTGEKPFACEICNKKFSRRYRLKKHTASHSVEKLFACEVCTKQFSRSSELKVHLRVHNGETLFACEICNKQFSRSSELKVHLRVHTGEHLFVCKICNKQFLRSAELKIHLRTHTGEKPFSCEICNKEFSQSSNLSAHMVVHSGERQFKCEICAKQFSRSHHLKVHLRGHTGENPFKCEICMKQFSRSYDLKRHLRVHTGEKPFACEICNKQFSRRIRLKEHTVLHSTEKRFACDICTEQFSMKSELNIHLRVHTGENPVACEMCNKQFSRIYELKRHLRVHSGEISCEICKKQFSSNYELKRHSGVHTGEKPFACEICNKQFSQRYRLKEHIVVHSVEKRFACEICNEQFSQSSDLKVHLKVHTEENLFTCETCMKQFSKSYELKVHLRVHTGEKPFTCEICNKQFAQSSNLNAHMTVHSEERLFTCEICKKQFSRHCYLKEHARVHTGEKPFTCEICTKQFSRSYDLKRHLRVHSGEKPFACEICKKQFSRSSRLKEHTLLHFAEKRFTCEICTEQFSMRSELKMHLRVHTEENQLPVKFA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437748;
- 90% Identity
- iTF_00437748;
- 80% Identity
- iTF_00437748;