Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML015983.1:480881-485890[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.34 89 6.5 3.4 2 23 72 93 71 93 0.96

2 22 7.7e-06 0.002 21.1 1.7 1 23 99 121 99 121 0.98

3 22 0.005 1.3 12.3 0.9 1 23 127 149 127 149 0.98

4 22 1.7e-05 0.0045 20.0 2.4 1 23 155 177 155 177 0.96

5 22 6e-07 0.00015 24.6 0.5 1 23 183 205 183 205 0.97

6 22 1.3e-07 3.3e-05 26.7 0.5 1 23 211 233 211 233 0.97

7 22 1.7e-05 0.0043 20.1 0.8 1 23 239 261 239 261 0.98

8 22 2.3e-07 6e-05 25.9 0.2 1 23 267 289 267 289 0.97

9 22 1.2e-05 0.0031 20.5 4.3 1 23 295 317 295 317 0.98

10 22 2.6e-06 0.00067 22.6 2.1 1 23 323 345 323 345 0.99

11 22 0.00079 0.21 14.8 0.6 1 23 351 373 351 373 0.93

12 22 1.8e-05 0.0046 20.0 0.2 1 23 379 401 379 401 0.97

13 22 5e-06 0.0013 21.7 0.7 3 23 409 429 408 429 0.98

14 22 4.6e-05 0.012 18.7 0.6 2 23 434 455 433 455 0.92

15 22 4.3e-05 0.011 18.8 0.5 1 23 461 483 461 483 0.96

16 22 1.7e-06 0.00045 23.2 0.2 1 23 489 511 489 511 0.97

17 22 0.00013 0.034 17.3 1.7 1 23 517 539 517 539 0.98

18 22 1.1e-07 2.8e-05 27.0 0.4 1 23 545 567 545 567 0.98

19 22 0.00038 0.1 15.8 6.0 1 23 573 595 573 595 0.98

20 22 1.4e-07 3.7e-05 26.6 2.0 1 23 601 623 601 623 0.98

21 22 5.8e-05 0.015 18.4 1.3 1 23 629 651 629 651 0.96

22 22 1.3e-05 0.0033 20.5 0.7 1 23 657 679 657 679 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.34	89	6.5	3.4	2	23	72	93	71	93	0.96
2	22	7.7e-06	0.002	21.1	1.7	1	23	99	121	99	121	0.98
3	22	0.005	1.3	12.3	0.9	1	23	127	149	127	149	0.98
4	22	1.7e-05	0.0045	20.0	2.4	1	23	155	177	155	177	0.96
5	22	6e-07	0.00015	24.6	0.5	1	23	183	205	183	205	0.97
6	22	1.3e-07	3.3e-05	26.7	0.5	1	23	211	233	211	233	0.97
7	22	1.7e-05	0.0043	20.1	0.8	1	23	239	261	239	261	0.98
8	22	2.3e-07	6e-05	25.9	0.2	1	23	267	289	267	289	0.97
9	22	1.2e-05	0.0031	20.5	4.3	1	23	295	317	295	317	0.98
10	22	2.6e-06	0.00067	22.6	2.1	1	23	323	345	323	345	0.99
11	22	0.00079	0.21	14.8	0.6	1	23	351	373	351	373	0.93
12	22	1.8e-05	0.0046	20.0	0.2	1	23	379	401	379	401	0.97
13	22	5e-06	0.0013	21.7	0.7	3	23	409	429	408	429	0.98
14	22	4.6e-05	0.012	18.7	0.6	2	23	434	455	433	455	0.92
15	22	4.3e-05	0.011	18.8	0.5	1	23	461	483	461	483	0.96
16	22	1.7e-06	0.00045	23.2	0.2	1	23	489	511	489	511	0.97
17	22	0.00013	0.034	17.3	1.7	1	23	517	539	517	539	0.98
18	22	1.1e-07	2.8e-05	27.0	0.4	1	23	545	567	545	567	0.98
19	22	0.00038	0.1	15.8	6.0	1	23	573	595	573	595	0.98
20	22	1.4e-07	3.7e-05	26.6	2.0	1	23	601	623	601	623	0.98
21	22	5.8e-05	0.015	18.4	1.3	1	23	629	651	629	651	0.96
22	22	1.3e-05	0.0033	20.5	0.7	1	23	657	679	657	679	0.98

Sequence Information

Coding Sequence: ATGGGTTTTTCGTGTGAAGATATAAAATCTGAGCCAAGTAATACATTAAAACAAGAAGATGATGGAAGTAGTCAATTGAACCCGTATTTAACTGACGTCATGAAAGTGAACACCACAGAAAAACCTTTTATATCAGAAATTGTTTCTGAACCGTCTACAACAAAGCCTGTTTTAAAAACACGTGAAAGAATGCTCAACAGGAAAAGACGTTTAAGGTGTAAAATATGCAACCAACAGTTTTTACAGCATTCCAGATTAAAAGAACATAGtaaagtgcacactggagaaaaaccatttaCATGTAAAATTTGCACGAAACAATTTTCAAGGATTTATGATTTAAATAGACATTTAACAgttcatactggtgaaaaaccatttgtgTGTGAAGTTTGCAGCAACCAGTTTTTAACGAGTTCTCGTTTAAAAAGACATTTAAGAGTTCATACTGGCGAAAAACCATTTGCATGTGAAATATGCAACAAAAAATTTTCACGAAGGTATCGTTTAAAAAAACATACAGCATCACATTCTGTAGAAAAACTTTTTGCATGTGAagtttgcaccaaacagttttcacgGAGTTCCGAATTAAAAGTGCATTTAAGAGTTCACAATGGAGAAACCCTTTTTGCATGTGAAATATGCAACAAACAGTTTTCACGGAGCTCCGAATTAAAAGTGCATTTAAGGGTTCACACTGGAGAACATCTATTTGTATGTAAAATATGCAACAAACAGTTTTTAAGGAGTGCtgaattaaaaatacatttaagGACTCATACCGGTGAAAAACCATTTTCATGTGAAATATGCAACAAAGAGTTTTCGCAAAGTTCTAATTTAAGCGCACATATGGTAGTACATTCTGGAGAAAGACagtttaaatgtgaaatttgcgcCAAACAGTTTTCACGGAGCCACCACTTAAAAGTGCATTTAAGAGGTCACACTGGAGAAAACCCATTTAAATGTGAAATCTGCATGAAACAATTTTCAAGGAGttatgatttaaaaagacatttaagagtccatactggtgaaaaaccatttgcgTGTGAAATATGCAACAAACAGTTTTCACGGAGGATTCGTTTAAAAGAACATACAGTATTACATTCTACAGAAAAACGTTTTGCCTGTGACATTTGCACTGAACAGTTTTCAATGAAATCCGAATTAAACATACATTTACGAGTTCATACTGGGGAAAACCCAGTTGCATGTGAAATGTGCAACAAACAATTTTCAAGAATTTATGAACTAAAGAGACATTTAAGAGTGCACTCTGGCGAAATTTCATGTGAAATTTGCAAGAAGCAATTTTCCAGCAATTATGAGTTAAAAAGACATTCAGGAgttcatactggtgaaaaaccatttgcaTGTGAAATATGCAACAAACAGTTTTCACAAAGATATCGTTTAAAAGAACATATAGTGGTACATTCTGTAGAAAAACGTTTTGCATGTGAAATATGCAACGAACAGTTTTCACAGAGTTCCGATTTAAAAGTGCATTTAAAAGTTCACACTGAAGAAAACCTATTTACGTGTGAAACTTGCATGAAACAATTTTCAAAGAGTTATGAATTAAAAGTACATTTAAGAGTTCATACCGGTGAAAAACCATTTACATGTGAAATATGCAACAAACAGTTTGCACAAAGTTCTAATTTAAACGCACATATGACAGTGCATTCTGAAGAAAGACTATTTACATGTGAAATTTGCAAAAAACAGTTTTCACGGCATTGTTACTTAAAAGAACATgcaagagtgcacactggagaaaaaccatttaCATGTGAAATTTGCACGAAACAATTCTCAAGAAGTTATGATTTAAAAAGGCATTTAAGAGTTCATTCCGGTGAAAAACCATTTGCATGTGAAATATGCAAAAAACAGTTTTCACGAAGCTCTCGTTTAAAAGAACATACATTATTACATTTTGCAGAAAAACGTTTTACATGTGAAATTTGCACTGAACAGTTTTCGATGAGATCCGAATTAAAAATGCATTTAAGAGTGCATACTGAGGAAAACCAGTTACCTGTGAAATTTGCCTGA
Protein Sequence: MGFSCEDIKSEPSNTLKQEDDGSSQLNPYLTDVMKVNTTEKPFISEIVSEPSTTKPVLKTRERMLNRKRRLRCKICNQQFLQHSRLKEHSKVHTGEKPFTCKICTKQFSRIYDLNRHLTVHTGEKPFVCEVCSNQFLTSSRLKRHLRVHTGEKPFACEICNKKFSRRYRLKKHTASHSVEKLFACEVCTKQFSRSSELKVHLRVHNGETLFACEICNKQFSRSSELKVHLRVHTGEHLFVCKICNKQFLRSAELKIHLRTHTGEKPFSCEICNKEFSQSSNLSAHMVVHSGERQFKCEICAKQFSRSHHLKVHLRGHTGENPFKCEICMKQFSRSYDLKRHLRVHTGEKPFACEICNKQFSRRIRLKEHTVLHSTEKRFACDICTEQFSMKSELNIHLRVHTGENPVACEMCNKQFSRIYELKRHLRVHSGEISCEICKKQFSSNYELKRHSGVHTGEKPFACEICNKQFSQRYRLKEHIVVHSVEKRFACEICNEQFSQSSDLKVHLKVHTEENLFTCETCMKQFSKSYELKVHLRVHTGEKPFTCEICNKQFAQSSNLNAHMTVHSEERLFTCEICKKQFSRHCYLKEHARVHTGEKPFTCEICTKQFSRSYDLKRHLRVHSGEKPFACEICKKQFSRSSRLKEHTLLHFAEKRFTCEICTEQFSMRSELKMHLRVHTEENQLPVKFA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437748;
90% Identity: iTF_00437748;
80% Identity: iTF_00437748;