g51866.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016034.1:456319-458280[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.031 1.9e+02 5.0 0.0 22 46 35 59 32 65 0.88 2 20 0.055 3.3e+02 4.2 0.0 25 46 66 87 60 93 0.87 3 20 0.17 1e+03 2.6 0.1 22 47 91 116 88 121 0.80 4 20 0.084 5e+02 3.6 0.0 22 46 119 143 110 151 0.87 5 20 0.065 3.9e+02 4.0 0.0 25 45 150 170 144 173 0.87 6 20 0.19 1.1e+03 2.5 0.0 22 47 175 200 173 205 0.80 7 20 0.11 6.7e+02 3.2 0.0 22 46 203 227 200 234 0.89 8 20 0.058 3.5e+02 4.1 0.0 25 46 234 255 226 259 0.87 9 20 0.17 1e+03 2.7 0.1 22 47 259 284 255 289 0.80 10 20 0.097 5.8e+02 3.4 0.0 22 46 287 311 282 319 0.88 11 20 0.027 1.6e+02 5.2 0.1 25 50 318 343 312 346 0.90 12 20 1.5 9e+03 -0.4 0.0 26 47 343 364 340 369 0.78 13 20 0.093 5.5e+02 3.5 0.0 22 46 367 391 353 399 0.88 14 20 0.87 5.2e+03 0.4 0.0 26 52 399 425 391 426 0.84 15 20 0.22 1.3e+03 2.3 0.3 20 48 421 449 404 452 0.82 16 20 0.015 91 6.0 0.1 12 52 442 482 437 484 0.87 17 20 0.026 1.6e+02 5.2 0.1 12 47 499 534 489 539 0.81 18 20 0.083 4.9e+02 3.6 0.0 22 44 537 559 532 563 0.90 19 20 0.019 1.1e+02 5.7 0.0 18 49 561 592 546 597 0.81 20 20 0.27 1.6e+03 2.0 0.1 20 43 619 642 603 648 0.83
Sequence Information
- Coding Sequence
- ATGGGACTACACACTGAAGATACGCCTTTTGCTGGTGAAGTTCGTGCCAACAAGTTTTCACAAACTTCCCATTTAAATGAAGATATGGCAATATACACTGGCGATAAACCTTTTGCATGTGAAATTTGCTCCAAAAGATGGTCATCAGAGAGCAATTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTTCCATTTAAATGAACATATGGCAATACATACTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAACACTTTTGCGTGTGAAGTTTGTGCCAAAAAGTTTTCACAAAGATCCGGGTTAAGAACACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCTGCAAGAGTTTTTCACGAAGGTCCAGTTTAACAGAACATATGAGAGTAGTACATGCTGGAGATAAACCTTTTGCATGTGAAATTTGTGCCAAAAAGTTTTCAAGAAGTTCCCATTTAAAAGATCATATGAAAATCCACACTGGCGATAAACCTTTTGTATGTGACATTTGCTCCAAGAGATTTTCACGAAGATCCAGTTTAACAGAACATATGAGAATAGTACATATTGGAGATAAACCTTTTGCATGTGAAATTTGCTTCAAAAGTTTTTCACAAAGATCCACGTTAGCAGAACATATTAGAGTACATACTGGTGATAAACCTTTTGAATGTAAAATTTGCTCCAAAAAGTTTTCACAAGGATCCGGGTTAAGAAAACATATAAGAGAACATACTAGCGATAAACCTTTTGCTTGTAAAATTTGCCTTAAGTGTTTTTCGCAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACCTTTTGCATGTGAAACATGCTTAAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGTGATAAACCTTTTGCTTGTGAAATTTGCTCCAAAAGTTTTTCACAAGAATCCAGTTTAGCAGAACATAATATGACAGTACATACATATGtatatatagtttag
- Protein Sequence
- MGLHTEDTPFAGEVRANKFSQTSHLNEDMAIYTGDKPFACEICSKRWSSESNLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSFHLNEHMAIHTFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDNTFACEVCAKKFSQRSGLRTHMRVHTSDKPFACEICCKSFSRRSSLTEHMRVVHAGDKPFACEICAKKFSRSSHLKDHMKIHTGDKPFVCDICSKRFSRRSSLTEHMRIVHIGDKPFACEICFKSFSQRSTLAEHIRVHTGDKPFECKICSKKFSQGSGLRKHIREHTSDKPFACKICLKCFSQRSSLTDHMTVHTGDKPFACETCLKRFSQRTGLSQHMRVHTSDKPFACEICSKSFSQESSLAEHNMTVHTYVYIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437269; iTF_00437212;
- 90% Identity
- iTF_00437269; iTF_00437212;
- 80% Identity
- iTF_00437269; iTF_00437212;