g51866.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016034.1:456319-458280[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.016 30 7.4 0.7 18 40 39 58 33 60 0.90 2 22 0.022 42 7.0 3.3 1 39 51 85 51 89 0.84 3 22 0.039 77 6.1 3.0 18 40 95 114 79 117 0.80 4 22 0.0027 5.3 9.9 1.5 18 40 123 142 115 144 0.90 5 22 0.15 3e+02 4.2 2.6 5 39 139 169 138 175 0.79 6 22 0.02 39 7.1 1.9 18 40 179 198 165 201 0.82 7 22 0.011 21 8.0 3.7 18 40 207 226 196 229 0.88 8 22 0.18 3.4e+02 4.0 0.9 13 39 230 253 226 257 0.78 9 22 0.023 45 6.9 2.1 18 40 263 282 251 285 0.82 10 22 0.0029 5.7 9.7 1.6 18 40 291 310 284 312 0.91 11 22 0.47 9.1e+02 2.7 0.3 13 29 314 330 310 341 0.79 12 22 0.013 25 7.7 1.5 18 40 343 362 331 365 0.81 13 22 0.0032 6.3 9.6 1.7 18 40 371 390 364 392 0.91 14 22 0.0024 4.7 10.0 1.7 4 40 386 418 385 422 0.84 15 22 0.065 1.3e+02 5.4 2.3 17 43 426 449 418 450 0.85 16 22 0.0097 19 8.1 0.7 18 40 456 475 452 478 0.87 17 22 0.0084 16 8.3 2.8 3 43 470 506 468 507 0.81 18 22 1.1 2.2e+03 1.5 1.0 14 40 509 532 501 535 0.75 19 22 0.00036 0.71 12.6 0.8 17 40 540 560 531 564 0.88 20 22 2 3.8e+03 0.7 1.9 18 39 569 587 561 591 0.71 21 22 0.35 6.9e+02 3.1 0.8 18 40 597 616 585 620 0.85 22 22 0.84 1.6e+03 1.9 0.3 18 30 625 639 617 647 0.72
Sequence Information
- Coding Sequence
- ATGGGACTACACACTGAAGATACGCCTTTTGCTGGTGAAGTTCGTGCCAACAAGTTTTCACAAACTTCCCATTTAAATGAAGATATGGCAATATACACTGGCGATAAACCTTTTGCATGTGAAATTTGCTCCAAAAGATGGTCATCAGAGAGCAATTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTTCCATTTAAATGAACATATGGCAATACATACTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAACACTTTTGCGTGTGAAGTTTGTGCCAAAAAGTTTTCACAAAGATCCGGGTTAAGAACACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCTGCAAGAGTTTTTCACGAAGGTCCAGTTTAACAGAACATATGAGAGTAGTACATGCTGGAGATAAACCTTTTGCATGTGAAATTTGTGCCAAAAAGTTTTCAAGAAGTTCCCATTTAAAAGATCATATGAAAATCCACACTGGCGATAAACCTTTTGTATGTGACATTTGCTCCAAGAGATTTTCACGAAGATCCAGTTTAACAGAACATATGAGAATAGTACATATTGGAGATAAACCTTTTGCATGTGAAATTTGCTTCAAAAGTTTTTCACAAAGATCCACGTTAGCAGAACATATTAGAGTACATACTGGTGATAAACCTTTTGAATGTAAAATTTGCTCCAAAAAGTTTTCACAAGGATCCGGGTTAAGAAAACATATAAGAGAACATACTAGCGATAAACCTTTTGCTTGTAAAATTTGCCTTAAGTGTTTTTCGCAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACCTTTTGCATGTGAAACATGCTTAAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGTGATAAACCTTTTGCTTGTGAAATTTGCTCCAAAAGTTTTTCACAAGAATCCAGTTTAGCAGAACATAATATGACAGTACATACATATGtatatatagtttag
- Protein Sequence
- MGLHTEDTPFAGEVRANKFSQTSHLNEDMAIYTGDKPFACEICSKRWSSESNLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSFHLNEHMAIHTFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDNTFACEVCAKKFSQRSGLRTHMRVHTSDKPFACEICCKSFSRRSSLTEHMRVVHAGDKPFACEICAKKFSRSSHLKDHMKIHTGDKPFVCDICSKRFSRRSSLTEHMRIVHIGDKPFACEICFKSFSQRSTLAEHIRVHTGDKPFECKICSKKFSQGSGLRKHIREHTSDKPFACKICLKCFSQRSSLTDHMTVHTGDKPFACETCLKRFSQRTGLSQHMRVHTSDKPFACEICSKSFSQESSLAEHNMTVHTYVYIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437747;
- 90% Identity
- iTF_00437747;
- 80% Identity
- iTF_00437747;