g51866.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML016034.1:456319-458280[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 2.5e-05 0.0064 19.5 0.5 1 23 38 60 38 60 0.97
2 22 5.6e-07 0.00015 24.7 0.8 1 23 66 88 66 88 0.97
3 22 3.6e-05 0.0093 19.0 0.8 1 23 94 116 94 116 0.97
4 22 2.6e-05 0.0068 19.5 0.8 1 23 122 144 122 144 0.97
5 22 5.6e-07 0.00015 24.7 0.8 1 23 150 172 150 172 0.97
6 22 3.6e-05 0.0093 19.0 0.8 1 23 178 200 178 200 0.97
7 22 2.6e-05 0.0068 19.5 0.8 1 23 206 228 206 228 0.97
8 22 5.6e-07 0.00015 24.7 0.8 1 23 234 256 234 256 0.97
9 22 3.6e-05 0.0093 19.0 0.8 1 23 262 284 262 284 0.97
10 22 2.6e-05 0.0068 19.5 0.8 1 23 290 312 290 312 0.97
11 22 1.2e-05 0.0031 20.5 0.6 1 23 318 340 318 340 0.97
12 22 3.6e-05 0.0093 19.0 0.8 1 23 342 364 342 364 0.97
13 22 2.6e-05 0.0068 19.5 0.8 1 23 370 392 370 392 0.97
14 22 1.3e-06 0.00033 23.6 0.5 1 23 398 420 398 420 0.97
15 22 7.4e-06 0.0019 21.2 1.8 1 23 426 449 426 449 0.97
16 22 6.6e-07 0.00017 24.5 2.0 1 23 455 477 455 477 0.97
17 22 6.4e-08 1.7e-05 27.7 0.7 1 23 483 506 483 506 0.97
18 22 8.2e-07 0.00021 24.2 0.4 1 23 512 534 512 534 0.97
19 22 1.9e-06 0.0005 23.0 1.0 1 23 540 562 540 562 0.98
20 22 6.6e-06 0.0017 21.3 2.7 1 23 568 590 568 590 0.97
21 22 2.8e-05 0.0072 19.4 1.0 1 23 596 618 596 618 0.97
22 22 2e-05 0.0051 19.8 0.2 1 23 624 647 624 647 0.96

Sequence Information

Coding Sequence
ATGGGACTACACACTGAAGATACGCCTTTTGCTGGTGAAGTTCGTGCCAACAAGTTTTCACAAACTTCCCATTTAAATGAAGATATGGCAATATACACTGGCGATAAACCTTTTGCATGTGAAATTTGCTCCAAAAGATGGTCATCAGAGAGCAATTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTCCCATTTAAATAAACATATGGCAATACATACTGGCGATGAACCTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAAGTCTTTTGCGTGTGAAATTTGTGCCAAAATGTTTTCACAAAGTTTCCATTTAAATGAACATATGGCAATACATACTTTTGCATGTAAAATTTGCTCCAAGGTGCTTTCAAAAAGATCCAGGTTAACAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATTGTCAGCAAAGAGCACTTTAAAAAGACATATGAAAATACATACTGAAGATAACACTTTTGCGTGTGAAGTTTGTGCCAAAAAGTTTTCACAAAGATCCGGGTTAAGAACACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCTGCAAGAGTTTTTCACGAAGGTCCAGTTTAACAGAACATATGAGAGTAGTACATGCTGGAGATAAACCTTTTGCATGTGAAATTTGTGCCAAAAAGTTTTCAAGAAGTTCCCATTTAAAAGATCATATGAAAATCCACACTGGCGATAAACCTTTTGTATGTGACATTTGCTCCAAGAGATTTTCACGAAGATCCAGTTTAACAGAACATATGAGAATAGTACATATTGGAGATAAACCTTTTGCATGTGAAATTTGCTTCAAAAGTTTTTCACAAAGATCCACGTTAGCAGAACATATTAGAGTACATACTGGTGATAAACCTTTTGAATGTAAAATTTGCTCCAAAAAGTTTTCACAAGGATCCGGGTTAAGAAAACATATAAGAGAACATACTAGCGATAAACCTTTTGCTTGTAAAATTTGCCTTAAGTGTTTTTCGCAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACCTTTTGCATGTGAAACATGCTTAAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGTGATAAACCTTTTGCTTGTGAAATTTGCTCCAAAAGTTTTTCACAAGAATCCAGTTTAGCAGAACATAATATGACAGTACATACATATGtatatatagtttag
Protein Sequence
MGLHTEDTPFAGEVRANKFSQTSHLNEDMAIYTGDKPFACEICSKRWSSESNLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSSHLNKHMAIHTGDEPFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDKSFACEICAKMFSQSFHLNEHMAIHTFACKICSKVLSKRSRLTDHMRVHTGDKPFACEICSKKLSAKSTLKRHMKIHTEDNTFACEVCAKKFSQRSGLRTHMRVHTSDKPFACEICCKSFSRRSSLTEHMRVVHAGDKPFACEICAKKFSRSSHLKDHMKIHTGDKPFVCDICSKRFSRRSSLTEHMRIVHIGDKPFACEICFKSFSQRSTLAEHIRVHTGDKPFECKICSKKFSQGSGLRKHIREHTSDKPFACKICLKCFSQRSSLTDHMTVHTGDKPFACETCLKRFSQRTGLSQHMRVHTSDKPFACEICSKSFSQESSLAEHNMTVHTYVYIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00437747;
90% Identity
iTF_00437747;
80% Identity
iTF_00437747;