g85154.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML018621.1:46560-56351[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.7 1.6e+04 -1.2 0.1 21 32 108 119 101 136 0.73 2 18 0.0075 45 7.0 0.0 21 47 136 162 131 167 0.89 3 18 0.064 3.8e+02 4.0 0.0 21 46 193 218 186 220 0.91 4 18 0.097 5.8e+02 3.4 0.1 27 46 283 302 278 307 0.90 5 18 0.39 2.3e+03 1.5 0.0 25 44 309 328 303 333 0.85 6 18 0.024 1.4e+02 5.4 0.0 21 48 333 359 330 362 0.89 7 18 0.72 4.3e+03 0.6 0.1 25 44 365 384 358 387 0.84 8 18 0.018 1.1e+02 5.8 0.0 21 46 389 414 385 419 0.91 9 18 0.76 4.5e+03 0.6 0.0 26 44 422 440 415 444 0.87 10 18 0.003 18 8.2 0.0 21 48 445 471 442 477 0.91 11 18 0.48 2.8e+03 1.2 0.5 26 47 478 499 470 504 0.76 12 18 1.1 6.4e+03 0.1 0.0 23 46 503 526 498 533 0.81 13 18 0.23 1.4e+03 2.2 0.0 21 44 529 552 524 556 0.87 14 18 0.065 3.9e+02 4.0 0.1 27 46 563 582 558 587 0.90 15 18 0.43 2.6e+03 1.4 0.1 23 44 587 608 581 613 0.85 16 18 0.0092 55 6.7 0.0 21 45 613 637 610 645 0.89 17 18 0.49 2.9e+03 1.2 0.0 22 44 642 664 637 669 0.84 18 18 0.013 80 6.2 0.1 21 45 669 693 665 697 0.89
Sequence Information
- Coding Sequence
- ATGGGTCAACACCCGCAAAAACTGTTGTACAAGTTTACAGCAGAAGAATTAGAAAACTTTACCCTACAATACTTTAGAAAATATGTGCATCCGTGGGAATTACTTCAATCTTGGTCTAAATTACCCAAGAAAGCAGTTCAAGATTTTGAGGATCAGACTCGTCTTCCATATTATGTACATTTTAATCGTCCCGAGTGGAGAACAGAGCTCGAAGGTGTCATATATGAAGATACAGCAACTGATGAATGCAACGAATTAAAAGATCACGTTATAAGTAAGCAATTGACCCAATGTACAACTACCGTAAAGAAAGAAAACGCTGTAGAAAAACCTTTTGAATGTGAAatatgcaccaaacagttttcgtACAGATCTCACTTGAAAATTCATATGATAActcatactggtgaaaaacctttttCGTGTGGAGTTTGCACCAAACAATTTACACAAAGTTCAGCTTTAAAACAGCATATGAAAATTCATACCACTGGAAAAAGTAAATTTGAATGTGACatatgcaccaaacagttttcaaacAAGTCTTATTTAAAACTACATATGAAATTGCACACTGGTGAAAATCCTTTTGTGTGTGAAGTTTGCACCAAGCAGTTTACTCAAAGTTCTTCTTTAAAAGTACATATGGCAATGCACACTGGAGAAAGTCAATTTGAATGTGAAGTATGCGCCAAACAGTTTTCTCATAGTTCTCATTTAAAACTTCATATGATAAAGCACTCTACTGAAAAACAGTTTGAATGTGAAatatgcaccaaacagttttcacaCTATTCTTCTTTAAATATGCATAAGAAAATACACACTGGAGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTCAAGATTTAACGAGACATTTGAGAATACACAATGGagaaaaactatttgtatgtaaCATATGCTCAAAACAGTTTTCACAAAGTGCTCACTTAAAGAGTCATATGCTAActcatactggtgaaaaaccttttgAATGTGAAGTTTGCTCCAAACAATTTACACAAAGCTCTTCTTTAAAACAGCATATGATAAGGCACACTGGAGAAGGTCAATTTAAATGTGAGatatgcaccaaacagttttcacgAAGTGCTAACTTAAAAATTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAAACACATATGAAAATGCACTGTgaagagagtaaatttgaatgtgaaatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGCTCATATGATAACTCATACTGATGAAAAACCTTTTGAGTGTGAAGTTTGCACCAAGCAGTTTACACAAAGTTCTTCTTTAAAAAAGCACATGGAAAGGCACACTGGAGAAGGTcaatttgaatgtgaaatttgtagcaAACGGTTTTCACGAAATCATGATTTAACGAGACATTTGAGAATACACAATACagaaaaactatttgtatgtaaCCTGTGCACAAAGCAGTTTTCACAAAGTGATTACTTAAAGACTCATATGAAAACTCATACTGATGAAAAACCTTTTGAGTGTGAAATTTGCTCGAAACAGTTTAAACAAAATTGTTCTTTAAAACTGCATAAGAAAGTACATACTGGTGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTAAAGATTTAACGAGACATTTGAGAATACACAGTGGAGAAAAACTCTTTTCATGTAAAATATGCAACAAACAGTTTTCACAAAGTGCCCACTTAAAGGGTCATATGCTAActcatactggtgaaaaacctttcaaGTGTGAAGTTTGTATCAAAGCGTTTACACAAAGTTCAGCTTTAAAACAGCATATTAAAAGGCACACTGGAGAACTTAAAGTTAAATGTGAAatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGTTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAACAGCATATGAAAAGGCATGCTGGAGATAATTGA
- Protein Sequence
- MGQHPQKLLYKFTAEELENFTLQYFRKYVHPWELLQSWSKLPKKAVQDFEDQTRLPYYVHFNRPEWRTELEGVIYEDTATDECNELKDHVISKQLTQCTTTVKKENAVEKPFECEICTKQFSYRSHLKIHMITHTGEKPFSCGVCTKQFTQSSALKQHMKIHTTGKSKFECDICTKQFSNKSYLKLHMKLHTGENPFVCEVCTKQFTQSSSLKVHMAMHTGESQFECEVCAKQFSHSSHLKLHMIKHSTEKQFECEICTKQFSHYSSLNMHKKIHTGDNLFGCEICTKQFARSQDLTRHLRIHNGEKLFVCNICSKQFSQSAHLKSHMLTHTGEKPFECEVCSKQFTQSSSLKQHMIRHTGEGQFKCEICTKQFSRSANLKIHMITHTGEKPFTCEVCAKQFTQNSSLKTHMKMHCEESKFECEICTKQFSQSAHLKAHMITHTDEKPFECEVCTKQFTQSSSLKKHMERHTGEGQFECEICSKRFSRNHDLTRHLRIHNTEKLFVCNLCTKQFSQSDYLKTHMKTHTDEKPFECEICSKQFKQNCSLKLHKKVHTGDNLFGCEICTKQFARSKDLTRHLRIHSGEKLFSCKICNKQFSQSAHLKGHMLTHTGEKPFKCEVCIKAFTQSSALKQHIKRHTGELKVKCEICTKQFSQSAHLKVHMITHTGEKPFTCEVCAKQFTQNSSLKQHMKRHAGDN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437268; iTF_00437208;
- 90% Identity
- iTF_00437268; iTF_00437208;
- 80% Identity
- iTF_00437268; iTF_00437208;