g85154.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML018621.1:46560-56351[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.035 68 6.3 1.0 17 39 112 131 104 135 0.77 2 20 0.029 57 6.6 0.4 18 40 141 160 132 162 0.87 3 20 0.00065 1.3 11.8 2.2 1 38 153 187 153 192 0.86 4 20 0.097 1.9e+02 4.9 0.4 14 39 194 216 182 224 0.79 5 20 0.4 7.7e+02 2.9 1.9 16 39 224 244 215 248 0.79 6 20 0.089 1.7e+02 5.0 2.7 5 29 242 265 238 272 0.78 7 20 0.0065 13 8.6 0.2 18 40 282 301 271 304 0.84 8 20 0.0047 9.2 9.1 1.5 15 39 307 328 302 334 0.74 9 20 0.0097 19 8.1 1.8 6 41 327 358 322 360 0.79 10 20 0.0014 2.8 10.7 1.3 15 41 363 386 358 388 0.84 11 20 0.18 3.5e+02 4.0 2.1 17 43 393 416 385 417 0.82 12 20 0.038 73 6.2 3.1 14 40 418 441 415 444 0.78 13 20 0.0018 3.5 10.4 1.4 5 41 438 470 434 472 0.84 14 20 0.029 57 6.6 2.8 14 40 474 497 467 500 0.83 15 20 0.0031 6 9.7 2.2 6 41 495 526 494 528 0.77 16 20 0.38 7.3e+02 3.0 2.3 9 28 526 544 520 552 0.80 17 20 0.0026 5.1 9.9 0.3 18 40 562 581 548 584 0.85 18 20 0.94 1.8e+03 1.7 8.4 14 30 586 611 579 640 0.60 19 20 0.0019 3.7 10.4 3.2 2 35 631 660 630 668 0.77 20 20 0.028 54 6.6 1.1 16 41 672 694 663 695 0.84
Sequence Information
- Coding Sequence
- ATGGGTCAACACCCGCAAAAACTGTTGTACAAGTTTACAGCAGAAGAATTAGAAAACTTTACCCTACAATACTTTAGAAAATATGTGCATCCGTGGGAATTACTTCAATCTTGGTCTAAATTACCCAAGAAAGCAGTTCAAGATTTTGAGGATCAGACTCGTCTTCCATATTATGTACATTTTAATCGTCCCGAGTGGAGAACAGAGCTCGAAGGTGTCATATATGAAGATACAGCAACTGATGAATGCAACGAATTAAAAGATCACGTTATAAGTAAGCAATTGACCCAATGTACAACTACCGTAAAGAAAGAAAACGCTGTAGAAAAACCTTTTGAATGTGAAatatgcaccaaacagttttcgtACAGATCTCACTTGAAAATTCATATGATAActcatactggtgaaaaacctttttCGTGTGGAGTTTGCACCAAACAATTTACACAAAGTTCAGCTTTAAAACAGCATATGAAAATTCATACCACTGGAAAAAGTAAATTTGAATGTGACatatgcaccaaacagttttcaaacAAGTCTTATTTAAAACTACATATGAAATTGCACACTGGTGAAAATCCTTTTGTGTGTGAAGTTTGCACCAAGCAGTTTACTCAAAGTTCTTCTTTAAAAGTACATATGGCAATGCACACTGGAGAAAGTCAATTTGAATGTGAAGTATGCGCCAAACAGTTTTCTCATAGTTCTCATTTAAAACTTCATATGATAAAGCACTCTACTGAAAAACAGTTTGAATGTGAAatatgcaccaaacagttttcacaCTATTCTTCTTTAAATATGCATAAGAAAATACACACTGGAGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTCAAGATTTAACGAGACATTTGAGAATACACAATGGagaaaaactatttgtatgtaaCATATGCTCAAAACAGTTTTCACAAAGTGCTCACTTAAAGAGTCATATGCTAActcatactggtgaaaaaccttttgAATGTGAAGTTTGCTCCAAACAATTTACACAAAGCTCTTCTTTAAAACAGCATATGATAAGGCACACTGGAGAAGGTCAATTTAAATGTGAGatatgcaccaaacagttttcacgAAGTGCTAACTTAAAAATTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAAACACATATGAAAATGCACTGTgaagagagtaaatttgaatgtgaaatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGCTCATATGATAACTCATACTGATGAAAAACCTTTTGAGTGTGAAGTTTGCACCAAGCAGTTTACACAAAGTTCTTCTTTAAAAAAGCACATGGAAAGGCACACTGGAGAAGGTcaatttgaatgtgaaatttgtagcaAACGGTTTTCACGAAATCATGATTTAACGAGACATTTGAGAATACACAATACagaaaaactatttgtatgtaaCCTGTGCACAAAGCAGTTTTCACAAAGTGATTACTTAAAGACTCATATGAAAACTCATACTGATGAAAAACCTTTTGAGTGTGAAATTTGCTCGAAACAGTTTAAACAAAATTGTTCTTTAAAACTGCATAAGAAAGTACATACTGGTGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTAAAGATTTAACGAGACATTTGAGAATACACAGTGGAGAAAAACTCTTTTCATGTAAAATATGCAACAAACAGTTTTCACAAAGTGCCCACTTAAAGGGTCATATGCTAActcatactggtgaaaaacctttcaaGTGTGAAGTTTGTATCAAAGCGTTTACACAAAGTTCAGCTTTAAAACAGCATATTAAAAGGCACACTGGAGAACTTAAAGTTAAATGTGAAatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGTTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAACAGCATATGAAAAGGCATGCTGGAGATAATTGA
- Protein Sequence
- MGQHPQKLLYKFTAEELENFTLQYFRKYVHPWELLQSWSKLPKKAVQDFEDQTRLPYYVHFNRPEWRTELEGVIYEDTATDECNELKDHVISKQLTQCTTTVKKENAVEKPFECEICTKQFSYRSHLKIHMITHTGEKPFSCGVCTKQFTQSSALKQHMKIHTTGKSKFECDICTKQFSNKSYLKLHMKLHTGENPFVCEVCTKQFTQSSSLKVHMAMHTGESQFECEVCAKQFSHSSHLKLHMIKHSTEKQFECEICTKQFSHYSSLNMHKKIHTGDNLFGCEICTKQFARSQDLTRHLRIHNGEKLFVCNICSKQFSQSAHLKSHMLTHTGEKPFECEVCSKQFTQSSSLKQHMIRHTGEGQFKCEICTKQFSRSANLKIHMITHTGEKPFTCEVCAKQFTQNSSLKTHMKMHCEESKFECEICTKQFSQSAHLKAHMITHTDEKPFECEVCTKQFTQSSSLKKHMERHTGEGQFECEICSKRFSRNHDLTRHLRIHNTEKLFVCNLCTKQFSQSDYLKTHMKTHTDEKPFECEICSKQFKQNCSLKLHKKVHTGDNLFGCEICTKQFARSKDLTRHLRIHSGEKLFSCKICNKQFSQSAHLKGHMLTHTGEKPFKCEVCIKAFTQSSALKQHIKRHTGELKVKCEICTKQFSQSAHLKVHMITHTGEKPFTCEVCAKQFTQNSSLKQHMKRHAGDN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437746;
- 90% Identity
- iTF_00437746;
- 80% Identity
- iTF_00437746;