Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML018621.1:54813-56351[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.047 2.8e+02 4.4 0.0 22 46 7 31 4 34 0.90

2 16 0.067 4e+02 3.9 0.1 27 46 96 115 91 120 0.90

3 16 0.29 1.7e+03 1.9 0.1 25 44 122 141 116 145 0.85

4 16 0.016 94 5.9 0.0 21 48 146 172 143 176 0.89

5 16 0.42 2.5e+03 1.4 0.1 24 44 177 197 170 202 0.84

6 16 0.012 72 6.3 0.0 21 46 202 227 198 234 0.91

7 16 0.53 3.1e+03 1.1 0.0 26 44 235 253 228 257 0.87

8 16 0.0021 12 8.8 0.0 21 48 258 284 253 288 0.91

9 16 0.29 1.8e+03 1.9 0.4 26 47 291 312 283 319 0.76

10 16 0.78 4.7e+03 0.5 0.0 22 46 315 339 310 345 0.82

11 16 0.17 1e+03 2.7 0.1 21 44 342 365 338 369 0.87

12 16 0.045 2.7e+02 4.5 0.1 27 46 376 395 371 400 0.90

13 16 0.33 2e+03 1.7 0.0 24 44 401 421 395 425 0.85

14 16 0.0064 38 7.2 0.0 21 45 426 450 422 457 0.90

15 16 0.34 2e+03 1.7 0.0 22 44 455 477 450 482 0.84

16 16 0.0095 57 6.7 0.1 21 45 482 506 479 510 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.047	2.8e+02	4.4	0.0	22	46	7	31	4	34	0.90
2	16	0.067	4e+02	3.9	0.1	27	46	96	115	91	120	0.90
3	16	0.29	1.7e+03	1.9	0.1	25	44	122	141	116	145	0.85
4	16	0.016	94	5.9	0.0	21	48	146	172	143	176	0.89
5	16	0.42	2.5e+03	1.4	0.1	24	44	177	197	170	202	0.84
6	16	0.012	72	6.3	0.0	21	46	202	227	198	234	0.91
7	16	0.53	3.1e+03	1.1	0.0	26	44	235	253	228	257	0.87
8	16	0.0021	12	8.8	0.0	21	48	258	284	253	288	0.91
9	16	0.29	1.8e+03	1.9	0.4	26	47	291	312	283	319	0.76
10	16	0.78	4.7e+03	0.5	0.0	22	46	315	339	310	345	0.82
11	16	0.17	1e+03	2.7	0.1	21	44	342	365	338	369	0.87
12	16	0.045	2.7e+02	4.5	0.1	27	46	376	395	371	400	0.90
13	16	0.33	2e+03	1.7	0.0	24	44	401	421	395	425	0.85
14	16	0.0064	38	7.2	0.0	21	45	426	450	422	457	0.90
15	16	0.34	2e+03	1.7	0.0	22	44	455	477	450	482	0.84
16	16	0.0095	57	6.7	0.1	21	45	482	506	479	510	0.89

Sequence Information

Coding Sequence: ATGAAATTGCACACTGGTGAAAATCCTTTTGTGTGTGAAGTTTGCACCAAGCAGTTTACTCAAAGTTCTTCTTTAAAAGTACATATGGCAATGCACACTGGAGAAAGTCAATTTGAATGTGAAGTATGCGCCAAACAGTTTTCTCATAGTTCTCATTTAAAACTTCATATGATAAAGCACTCTACTGAAAAACAGTTTGAATGTGAAatatgcaccaaacagttttcacaCTATTCTTCTTTAAATATGCATAAGAAAATACACACTGGAGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTCAAGATTTAACGAGACATTTGAGAATACACAATGGagaaaaactatttgtatgtaaCATATGCTCAAAACAGTTTTCACAAAGTGCTCACTTAAAGAGTCATATGCTAActcatactggtgaaaaaccttttgAATGTGAAGTTTGCTCCAAACAATTTACACAAAGCTCTTCTTTAAAACAGCATATGATAAGGCACACTGGAGAAGGTCAATTTAAATGTGAGatatgcaccaaacagttttcacgAAGTGCTAACTTAAAAATTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAAACACATATGAAAATGCACTGTgaagagagtaaatttgaatgtgaaatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGCTCATATGATAACTCATACTGATGAAAAACCTTTTGAGTGTGAAGTTTGCACCAAGCAGTTTACACAAAGTTCTTCTTTAAAAAAGCACATGGAAAGGCACACTGGAGAAGGTcaatttgaatgtgaaatttgtagcaAACGGTTTTCACGAAATCATGATTTAACGAGACATTTGAGAATACACAATACagaaaaactatttgtatgtaaCCTGTGCACAAAGCAGTTTTCACAAAGTGATTACTTAAAGACTCATATGAAAACTCATACTGATGAAAAACCTTTTGAGTGTGAAATTTGCTCGAAACAGTTTAAACAAAATTGTTCTTTAAAACTGCATAAGAAAGTACATACTGGTGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTAAAGATTTAACGAGACATTTGAGAATACACAGTGGAGAAAAACTCTTTTCATGTAAAATATGCAACAAACAGTTTTCACAAAGTGCCCACTTAAAGGGTCATATGCTAActcatactggtgaaaaacctttcaaGTGTGAAGTTTGTATCAAAGCGTTTACACAAAGTTCAGCTTTAAAACAGCATATTAAAAGGCACACTGGAGAACTTAAAGTTAAATGTGAAatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGTTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAACAGCATATGAAAAGGCATGCTGGAGATAATTGA
Protein Sequence: MKLHTGENPFVCEVCTKQFTQSSSLKVHMAMHTGESQFECEVCAKQFSHSSHLKLHMIKHSTEKQFECEICTKQFSHYSSLNMHKKIHTGDNLFGCEICTKQFARSQDLTRHLRIHNGEKLFVCNICSKQFSQSAHLKSHMLTHTGEKPFECEVCSKQFTQSSSLKQHMIRHTGEGQFKCEICTKQFSRSANLKIHMITHTGEKPFTCEVCAKQFTQNSSLKTHMKMHCEESKFECEICTKQFSQSAHLKAHMITHTDEKPFECEVCTKQFTQSSSLKKHMERHTGEGQFECEICSKRFSRNHDLTRHLRIHNTEKLFVCNLCTKQFSQSDYLKTHMKTHTDEKPFECEICSKQFKQNCSLKLHKKVHTGDNLFGCEICTKQFARSKDLTRHLRIHSGEKLFSCKICNKQFSQSAHLKGHMLTHTGEKPFKCEVCIKAFTQSSALKQHIKRHTGELKVKCEICTKQFSQSAHLKVHMITHTGEKPFTCEVCAKQFTQNSSLKQHMKRHAGDN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437207; iTF_00437273;
90% Identity: iTF_00437207; iTF_00437273;
80% Identity: iTF_00437207; iTF_00437273;