g85156.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML018621.1:54813-56351[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.082 1.6e+02 5.1 0.1 17 39 10 29 2 37 0.80 2 18 0.17 3.3e+02 4.1 1.1 17 39 38 57 31 61 0.79 3 18 0.065 1.3e+02 5.4 2.8 5 29 55 78 51 85 0.78 4 18 0.0046 8.9 9.1 0.2 18 40 95 114 84 117 0.84 5 18 0.0084 16 8.3 3.6 13 39 118 141 111 145 0.70 6 18 0.0073 14 8.5 2.0 6 41 140 171 135 173 0.79 7 18 0.00089 1.7 11.4 1.0 15 41 176 199 172 202 0.84 8 18 0.099 1.9e+02 4.8 1.6 17 43 206 229 200 230 0.83 9 18 0.018 35 7.2 2.6 14 40 231 254 227 256 0.78 10 18 0.0012 2.4 11.0 1.4 5 41 251 283 247 285 0.84 11 18 0.0044 8.7 9.2 3.6 2 40 276 310 275 313 0.88 12 18 0.0021 4.2 10.2 2.2 6 41 308 339 307 342 0.77 13 18 0.26 5e+02 3.5 2.3 9 28 339 357 333 364 0.79 14 18 0.0018 3.5 10.4 0.3 18 40 375 394 361 397 0.85 15 18 0.015 30 7.4 1.4 17 29 402 414 395 425 0.75 16 18 0.046 90 5.9 0.7 16 41 429 451 420 453 0.85 17 18 0.0011 2.1 11.2 2.9 2 35 444 473 443 481 0.77 18 18 0.019 37 7.1 1.1 16 41 485 507 476 508 0.84
Sequence Information
- Coding Sequence
- ATGAAATTGCACACTGGTGAAAATCCTTTTGTGTGTGAAGTTTGCACCAAGCAGTTTACTCAAAGTTCTTCTTTAAAAGTACATATGGCAATGCACACTGGAGAAAGTCAATTTGAATGTGAAGTATGCGCCAAACAGTTTTCTCATAGTTCTCATTTAAAACTTCATATGATAAAGCACTCTACTGAAAAACAGTTTGAATGTGAAatatgcaccaaacagttttcacaCTATTCTTCTTTAAATATGCATAAGAAAATACACACTGGAGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTCAAGATTTAACGAGACATTTGAGAATACACAATGGagaaaaactatttgtatgtaaCATATGCTCAAAACAGTTTTCACAAAGTGCTCACTTAAAGAGTCATATGCTAActcatactggtgaaaaaccttttgAATGTGAAGTTTGCTCCAAACAATTTACACAAAGCTCTTCTTTAAAACAGCATATGATAAGGCACACTGGAGAAGGTCAATTTAAATGTGAGatatgcaccaaacagttttcacgAAGTGCTAACTTAAAAATTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAAACACATATGAAAATGCACTGTgaagagagtaaatttgaatgtgaaatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGCTCATATGATAACTCATACTGATGAAAAACCTTTTGAGTGTGAAGTTTGCACCAAGCAGTTTACACAAAGTTCTTCTTTAAAAAAGCACATGGAAAGGCACACTGGAGAAGGTcaatttgaatgtgaaatttgtagcaAACGGTTTTCACGAAATCATGATTTAACGAGACATTTGAGAATACACAATACagaaaaactatttgtatgtaaCCTGTGCACAAAGCAGTTTTCACAAAGTGATTACTTAAAGACTCATATGAAAACTCATACTGATGAAAAACCTTTTGAGTGTGAAATTTGCTCGAAACAGTTTAAACAAAATTGTTCTTTAAAACTGCATAAGAAAGTACATACTGGTGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTAAAGATTTAACGAGACATTTGAGAATACACAGTGGAGAAAAACTCTTTTCATGTAAAATATGCAACAAACAGTTTTCACAAAGTGCCCACTTAAAGGGTCATATGCTAActcatactggtgaaaaacctttcaaGTGTGAAGTTTGTATCAAAGCGTTTACACAAAGTTCAGCTTTAAAACAGCATATTAAAAGGCACACTGGAGAACTTAAAGTTAAATGTGAAatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGTTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAACAGCATATGAAAAGGCATGCTGGAGATAATTGA
- Protein Sequence
- MKLHTGENPFVCEVCTKQFTQSSSLKVHMAMHTGESQFECEVCAKQFSHSSHLKLHMIKHSTEKQFECEICTKQFSHYSSLNMHKKIHTGDNLFGCEICTKQFARSQDLTRHLRIHNGEKLFVCNICSKQFSQSAHLKSHMLTHTGEKPFECEVCSKQFTQSSSLKQHMIRHTGEGQFKCEICTKQFSRSANLKIHMITHTGEKPFTCEVCAKQFTQNSSLKTHMKMHCEESKFECEICTKQFSQSAHLKAHMITHTDEKPFECEVCTKQFTQSSSLKKHMERHTGEGQFECEICSKRFSRNHDLTRHLRIHNTEKLFVCNLCTKQFSQSDYLKTHMKTHTDEKPFECEICSKQFKQNCSLKLHKKVHTGDNLFGCEICTKQFARSKDLTRHLRIHSGEKLFSCKICNKQFSQSAHLKGHMLTHTGEKPFKCEVCIKAFTQSSALKQHIKRHTGELKVKCEICTKQFSQSAHLKVHMITHTGEKPFTCEVCAKQFTQNSSLKQHMKRHAGDN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437745;
- 90% Identity
- iTF_00437745;
- 80% Identity
- iTF_00437745;