Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML018621.1:54813-56351[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.8e-07 0.00012 24.9 0.5 1 23 10 32 10 32 0.98

2 18 1.1e-05 0.0028 20.7 3.7 1 23 38 60 38 60 0.98

3 18 4e-05 0.01 18.9 3.4 1 23 66 88 66 88 0.98

4 18 4.9e-06 0.0013 21.7 0.6 3 23 96 116 94 116 0.98

5 18 3.4e-07 8.9e-05 25.4 2.5 1 23 122 144 122 144 0.98

6 18 4.5e-07 0.00012 25.0 1.3 1 23 150 172 150 172 0.98

7 18 6.3e-08 1.6e-05 27.7 1.0 1 23 178 200 178 200 0.99

8 18 8.2e-07 0.00021 24.2 1.7 1 23 206 228 206 228 0.98

9 18 1.6e-07 4.3e-05 26.4 1.3 1 23 234 256 234 256 0.98

10 18 3e-07 7.7e-05 25.6 1.8 1 23 262 284 262 284 0.98

11 18 1.5e-07 4e-05 26.5 2.9 1 23 290 312 290 312 0.98

12 18 6.7e-07 0.00017 24.5 2.7 1 23 318 340 318 340 0.98

13 18 0.00017 0.045 16.9 4.2 1 23 346 368 346 368 0.98

14 18 3.3e-06 0.00086 22.3 0.7 3 23 376 396 374 396 0.98

15 18 8.9e-07 0.00023 24.1 2.8 1 23 402 424 402 424 0.98

16 18 6.1e-06 0.0016 21.5 0.8 1 23 430 452 430 452 0.99

17 18 7.8e-07 0.0002 24.3 1.4 2 23 459 480 458 480 0.98

18 18 9.8e-07 0.00025 24.0 2.1 1 23 486 508 486 508 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.8e-07	0.00012	24.9	0.5	1	23	10	32	10	32	0.98
2	18	1.1e-05	0.0028	20.7	3.7	1	23	38	60	38	60	0.98
3	18	4e-05	0.01	18.9	3.4	1	23	66	88	66	88	0.98
4	18	4.9e-06	0.0013	21.7	0.6	3	23	96	116	94	116	0.98
5	18	3.4e-07	8.9e-05	25.4	2.5	1	23	122	144	122	144	0.98
6	18	4.5e-07	0.00012	25.0	1.3	1	23	150	172	150	172	0.98
7	18	6.3e-08	1.6e-05	27.7	1.0	1	23	178	200	178	200	0.99
8	18	8.2e-07	0.00021	24.2	1.7	1	23	206	228	206	228	0.98
9	18	1.6e-07	4.3e-05	26.4	1.3	1	23	234	256	234	256	0.98
10	18	3e-07	7.7e-05	25.6	1.8	1	23	262	284	262	284	0.98
11	18	1.5e-07	4e-05	26.5	2.9	1	23	290	312	290	312	0.98
12	18	6.7e-07	0.00017	24.5	2.7	1	23	318	340	318	340	0.98
13	18	0.00017	0.045	16.9	4.2	1	23	346	368	346	368	0.98
14	18	3.3e-06	0.00086	22.3	0.7	3	23	376	396	374	396	0.98
15	18	8.9e-07	0.00023	24.1	2.8	1	23	402	424	402	424	0.98
16	18	6.1e-06	0.0016	21.5	0.8	1	23	430	452	430	452	0.99
17	18	7.8e-07	0.0002	24.3	1.4	2	23	459	480	458	480	0.98
18	18	9.8e-07	0.00025	24.0	2.1	1	23	486	508	486	508	0.98

Sequence Information

Coding Sequence: ATGAAATTGCACACTGGTGAAAATCCTTTTGTGTGTGAAGTTTGCACCAAGCAGTTTACTCAAAGTTCTTCTTTAAAAGTACATATGGCAATGCACACTGGAGAAAGTCAATTTGAATGTGAAGTATGCGCCAAACAGTTTTCTCATAGTTCTCATTTAAAACTTCATATGATAAAGCACTCTACTGAAAAACAGTTTGAATGTGAAatatgcaccaaacagttttcacaCTATTCTTCTTTAAATATGCATAAGAAAATACACACTGGAGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTCAAGATTTAACGAGACATTTGAGAATACACAATGGagaaaaactatttgtatgtaaCATATGCTCAAAACAGTTTTCACAAAGTGCTCACTTAAAGAGTCATATGCTAActcatactggtgaaaaaccttttgAATGTGAAGTTTGCTCCAAACAATTTACACAAAGCTCTTCTTTAAAACAGCATATGATAAGGCACACTGGAGAAGGTCAATTTAAATGTGAGatatgcaccaaacagttttcacgAAGTGCTAACTTAAAAATTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAAACACATATGAAAATGCACTGTgaagagagtaaatttgaatgtgaaatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGCTCATATGATAACTCATACTGATGAAAAACCTTTTGAGTGTGAAGTTTGCACCAAGCAGTTTACACAAAGTTCTTCTTTAAAAAAGCACATGGAAAGGCACACTGGAGAAGGTcaatttgaatgtgaaatttgtagcaAACGGTTTTCACGAAATCATGATTTAACGAGACATTTGAGAATACACAATACagaaaaactatttgtatgtaaCCTGTGCACAAAGCAGTTTTCACAAAGTGATTACTTAAAGACTCATATGAAAACTCATACTGATGAAAAACCTTTTGAGTGTGAAATTTGCTCGAAACAGTTTAAACAAAATTGTTCTTTAAAACTGCATAAGAAAGTACATACTGGTGATAACCTTTTTGGATGTGAAATTTGTACCAAACAGTTTGCAAGAAGTAAAGATTTAACGAGACATTTGAGAATACACAGTGGAGAAAAACTCTTTTCATGTAAAATATGCAACAAACAGTTTTCACAAAGTGCCCACTTAAAGGGTCATATGCTAActcatactggtgaaaaacctttcaaGTGTGAAGTTTGTATCAAAGCGTTTACACAAAGTTCAGCTTTAAAACAGCATATTAAAAGGCACACTGGAGAACTTAAAGTTAAATGTGAAatatgcaccaaacagttttcacaaAGTGCTCACTTAAAAGTTCATATGATAActcatactggtgaaaaaccttttaCATGTGAAGTTTGCGCCAAACAGTTTACTCAAAATTCTTCTTTAAAACAGCATATGAAAAGGCATGCTGGAGATAATTGA
Protein Sequence: MKLHTGENPFVCEVCTKQFTQSSSLKVHMAMHTGESQFECEVCAKQFSHSSHLKLHMIKHSTEKQFECEICTKQFSHYSSLNMHKKIHTGDNLFGCEICTKQFARSQDLTRHLRIHNGEKLFVCNICSKQFSQSAHLKSHMLTHTGEKPFECEVCSKQFTQSSSLKQHMIRHTGEGQFKCEICTKQFSRSANLKIHMITHTGEKPFTCEVCAKQFTQNSSLKTHMKMHCEESKFECEICTKQFSQSAHLKAHMITHTDEKPFECEVCTKQFTQSSSLKKHMERHTGEGQFECEICSKRFSRNHDLTRHLRIHNTEKLFVCNLCTKQFSQSDYLKTHMKTHTDEKPFECEICSKQFKQNCSLKLHKKVHTGDNLFGCEICTKQFARSKDLTRHLRIHSGEKLFSCKICNKQFSQSAHLKGHMLTHTGEKPFKCEVCIKAFTQSSALKQHIKRHTGELKVKCEICTKQFSQSAHLKVHMITHTGEKPFTCEVCAKQFTQNSSLKQHMKRHAGDN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437745;
90% Identity: iTF_00437745;
80% Identity: iTF_00437745;