Dtru023672.1
Basic Information
- Insect
- Deroplatys truncata
- Gene Symbol
- Snai1
- Assembly
- GCA_030765065.1
- Location
- CM060978.1:33722893-33752374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00024 0.16 15.3 0.1 1 23 271 293 271 293 0.95 2 12 2e-05 0.014 18.7 1.6 1 23 301 323 301 323 0.99 3 12 2.4e-05 0.016 18.4 0.4 2 23 331 352 330 352 0.97 4 12 1.4e-05 0.0092 19.2 0.7 1 23 358 380 358 380 0.98 5 12 1e-05 0.0067 19.6 0.4 1 23 387 409 387 409 0.99 6 12 2.6e-05 0.017 18.3 0.0 1 23 415 437 415 437 0.94 7 12 2.1e-05 0.014 18.6 0.3 1 23 443 465 443 465 0.98 8 12 6e-07 0.0004 23.5 1.2 1 23 471 494 471 494 0.96 9 12 9.7e-06 0.0065 19.7 0.5 1 23 500 523 500 523 0.95 10 12 2e-06 0.0013 21.8 2.3 1 23 529 551 529 551 0.99 11 12 1.3e-05 0.009 19.2 0.6 1 23 557 579 557 579 0.97 12 12 0.00025 0.17 15.2 0.1 1 23 585 609 585 609 0.94
Sequence Information
- Coding Sequence
- ATGACCGCAGATACGGAGAAGGAACAGGTTACTGCTCCCAAAAGCACCCATTGCCTTATATGCAACAGTCGAGTGGCTGTCTCGACACGAAACTGCTTTGAAATTTTCCATAAGAACCTTACAACAGCTACGTCAGAGCGCCCATTGTCATTTACAATTGGGGCAGTTCTTGGACTAGAGATACGAGAAGATACAGTACACAGCAATGTTATCTGCAAGAAGTGCTTAAAGTTGATCAACGAAGTAGATGAGATAGAAACTAGACTAGAAGAACTCAGGGTGGAACTTAACTCCAATTATCAACGAACTATTAAAATACAGACCGAAGGTGGAAAAGACTCGCCTCTTCCAGATGATGATGGAGATCGCAAGCTGCCGCTTGGTTCAGATGATGGGAACGTGAAGAAACATTTCCTTGAAGGAGTACGTAAGAAAATTATACCAAAGAAAATGAAATCACCTTCTCACAGTGCTGAAGACTATGAGCAAAAGGAAAACACACTTTGTGAAATACAGCTGACAGAACAAGACAGTGATGGTGACATGAGCGAGATGATCCCCGGTGATGATGATACGGAGTACATACCAGGCCAAGGGGATGTGAAGATAAAGGTTGAACCAGATGATGGAGATGGCAGAAGAAGAATGAtgagaaagaaaagaatggagaTGGAATCGGAGATACCAGAAAAAGTTATTGCTAGGGAGGGAGTAGATTTTCTATGTTTGTTGTGCAATGGGGATGAAAAGATTTTAGGAGATATGAAAGGAATAGTAGGCCatctcaagggcactcataacgTTCGCATCTACATCTGTGACATTTGTGGACAGGACtttagaaaaagaaatgaattatCCATACATTTGGATGATCATGTTGCAACAGAAGAGGGGGATTTCCAATGTGAAGTATGCAATCGCATCTTCAGTAATCTTAGACTATTCCGTGTACACAAGCGTATGCATTATCCACAAGCAAAACTGTGGACCTGTGAGACTTGCGGCAAGCGATACAGCTCCCGCAATTTGCTGGATGAACACATCAACACACACACTGGAGTACGACCATATGTGTGCGAGGCATGTGGGAAAGACTTTGCCTCTAAATACACATATAAGGCCCATACCAAGACCCATGAAGTACGTCCACGACCGTACTCTTGCAGTGAATGTGGCAAAACATTCTTGAGTGCACAGAACCTAGCACAGCATGAGCGAACACATACAGGCATGCGTAACTATGTATGTGACCAATGTGGCAAGGCATTTGGCACTGCACGCAACTTGGAGGTACATAGCGTCGTGCATTCGGGCTACAAACCATTCATATGCCGGACCTGTGGCAAAGCTTTCGCCCGCAAGGCAGAGATCCGAGATCATGAGCGTACTCATACTGGAGAGAAGCCCTATCAGTGTGAATTCTGTGGTGCCACATTCAGCCAACGCAGCAATCTGCAGTCCCACAAGCGCGCTACCCACTACCAGGACAAACGCTACAAGTGCGAGGACTGCGGCAAGGGATTCAAGCGACGACGTCTCCTGGACTACCATGTGAAAGCTGCTCACACTGGTGAGCGCCCATACAAATGTCCAACCTGTGATGCCACATTTGTATATCCAGAGCACTTCAAGAAGCACCGTCGTATACATACAGGAGAGAAGCCATTCCGCTGTGAGGTTTGTGGCAAAGCATTCAATAGCAGAGACAACAGAAATGCACACAGGTTCGTGCATAGCGACAAGAAACCATACGAGTGCTTGGTGTGTGGCATGGGATTCATGCGCAAGCCACTGCTTTACAATCACATGCAGACACAAGGTCACCTTAATGACACTATTGTCGTAAACCAGCCTCGTTTAGCAACAGATGAAGATCTTGCTGCAGAGGCTGTTGCTGAAGCTGAAGCGACCGAGGTAGAGATGACTATTGTTGGTGAAGATCCCAACGCAGACCAGGAAACGAAGCTCTACATAGCTGAATTTAAGGATCACGTCATCATCCAGCATGAAGGTGATGACCGAGTTTACGCAGAGAAGACAGTGGTGGTGGGGAGTGATGATTCTGATCTTAAAGACGGGGAGCAGCATATGGTGCAGGAAGCTGTGGAGCATCTCATTATAGACGGGCAAGTCCATTTTGCTGATCCAAACGAGCTTGCAAACATGCATGCAGATATAGGCTCTGTGGCGGAAATAACAACCACCACATCTAATTACGTGAGGAGTGCCGAAGGTCGACATGCACTTGTGGTTCCTGCAACTCCACACATGTTGTCTTCTGCAGCAGAGGCATTTGAAGAGAGTCAAGTAGTGGATCAGGAATCAGGTACGATAACAACTCTGGGAACAACGCAAAGCCTGCAGACGAATCAAGGGCCTGTACATTTGGTTCAGATACGTATTCCATCGGCAGAACATGGTGGCAACCGAGGAGCATGGTTCAACATAGCAGACACCCAACAGTGA
- Protein Sequence
- MTADTEKEQVTAPKSTHCLICNSRVAVSTRNCFEIFHKNLTTATSERPLSFTIGAVLGLEIREDTVHSNVICKKCLKLINEVDEIETRLEELRVELNSNYQRTIKIQTEGGKDSPLPDDDGDRKLPLGSDDGNVKKHFLEGVRKKIIPKKMKSPSHSAEDYEQKENTLCEIQLTEQDSDGDMSEMIPGDDDTEYIPGQGDVKIKVEPDDGDGRRRMMRKKRMEMESEIPEKVIAREGVDFLCLLCNGDEKILGDMKGIVGHLKGTHNVRIYICDICGQDFRKRNELSIHLDDHVATEEGDFQCEVCNRIFSNLRLFRVHKRMHYPQAKLWTCETCGKRYSSRNLLDEHINTHTGVRPYVCEACGKDFASKYTYKAHTKTHEVRPRPYSCSECGKTFLSAQNLAQHERTHTGMRNYVCDQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYQDKRYKCEDCGKGFKRRRLLDYHVKAAHTGERPYKCPTCDATFVYPEHFKKHRRIHTGEKPFRCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQTQGHLNDTIVVNQPRLATDEDLAAEAVAEAEATEVEMTIVGEDPNADQETKLYIAEFKDHVIIQHEGDDRVYAEKTVVVGSDDSDLKDGEQHMVQEAVEHLIIDGQVHFADPNELANMHADIGSVAEITTTTSNYVRSAEGRHALVVPATPHMLSSAAEAFEESQVVDQESGTITTLGTTQSLQTNQGPVHLVQIRIPSAEHGGNRGAWFNIADTQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955781; iTF_01567206; iTF_00210057; iTF_00821163; iTF_01410924; iTF_01410926; iTF_00995535; iTF_00370387; iTF_00370386; iTF_00396535;
- 90% Identity
- iTF_00995535; iTF_00821163; iTF_01410924;
- 80% Identity
- -