Csec005307.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- Snai1
- Assembly
- GCA_002891405.2
- Location
- NW:126378-145943[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00044 0.013 15.5 0.1 1 23 280 302 280 302 0.95 2 12 4.4e-05 0.0012 18.6 1.6 1 23 310 332 310 332 0.99 3 12 5.2e-05 0.0015 18.4 0.4 2 23 340 361 339 361 0.97 4 12 3e-05 0.00085 19.2 0.7 1 23 367 389 367 389 0.98 5 12 4.3e-05 0.0012 18.6 0.5 1 23 396 418 396 418 0.98 6 12 5.6e-05 0.0016 18.3 0.0 1 23 424 446 424 446 0.94 7 12 4.5e-05 0.0013 18.6 0.3 1 23 452 474 452 474 0.98 8 12 1.3e-06 3.7e-05 23.4 1.2 1 23 480 503 480 503 0.96 9 12 2.1e-05 0.0006 19.6 0.5 1 23 509 532 509 532 0.95 10 12 4.3e-06 0.00012 21.8 2.3 1 23 538 560 538 560 0.99 11 12 2.9e-05 0.00082 19.2 0.6 1 23 566 588 566 588 0.97 12 12 0.0011 0.031 14.3 0.1 1 23 594 618 594 618 0.92
Sequence Information
- Coding Sequence
- ATGACTGCAGACACAGAAAAGGAGCAGGGTACTGCTCCAAAAAGCACCCACTGTTTAATATGCAACAGCAGAGTTGGTGTCTCAACTCGTAATAGCCTTGAGATCTTCCATAAAACCATAGTAACAACATCAGAAAGACCATTGTCATATACCATTGGAGCAGTGCTGGGTCAGGAAATGAGTGAGGATTCAGTTCATAGTAATGTAATCTGTAAGAAGTGTTTCAAGTTGATTAATGAAGTTGACGAAATAGAAACTCGATTAGCAGAGCTGAAATTGGAACTTACAACAAACTATCAACGAACACTAAAGATTCAGAGTGATGGTGGAAAACACTCACCAACCTTAGATGATGATGACCGCAAGTTGCCTCTTGGTTCTGATGATGGGAATGTTAGGAAAAATATTCTACAAGGATCTCGGAAGAAAATGGTATCCAAGAAAATGAAGCCATCTTCTTCTCACAACAGTGAAGAGGACTATGAACAGAAGGAAAATACTCTCTGTGAAGTGGAACTGTCAGAAcatgacagtgacagtgacatgAACCAAGATGTTATTGTAactgcaaaagttggtactgaAGATGATCCTGAttgtgaagtgaaaataaaaattgaaccTGATGATGACACTGATAGAGAAAATGTTGCTAAAAGGAAGATgttcaagaagaaatcacaaagGCTGGAATTACAAGAATCAGAGATTCCAGACAAGGTAGTGGAGAAGGAAGGTGTGGATTTTGTATGTTTGCTTTGTAATGGTGATGAGAAAATACTGGGAGACATGAAAGGAATGGTGAACCACCTGAAGAGCCACCACAATATTCGTATATACATTTGTGATATATGTGGACAAGACTTTAGAAAACGCAATGAATTATCTGTTCATCTGGATGATCATGTAGCAACAGAAGAAGGTGACTTCCAGTGTGAGGTTTGCAATCGAATTTTTAGTAACTTGCGTCTGTTCCGTGTGCACAAACGCATGCACTATCCACAAACAAAATTGTGGACATGTGAGACATGTGGGAAGCGTTACAGCTCAAGAAACCTTCTGGATGAACACATCAACACCCATACTGGGGTTAGACCTTATGTTTGTGAGGCATGTGGCAAGGATTTTGCGTCTAAGTACACATACAAGGCACATACGAAAACCCATGAAGTGCGTCCTCGGCCCTTCTCATGTGGAGACTGTGGAAAGACATTCCTGAGTGCACAGAATCTCTCACAACATGAGCGTACACATACTGGGATGCGAAATTATGTGTGTGACCAATGTGGTAAGGCATTTGGTACAGCACGCAACTTGGAAGTACATAGTGTGGTGCACTCTGGATATAAACCATTCATTTGTCGTACCTGTGGGAAAGCCTTTGCACGTAAGGCAGAAATTCGTGATCATGAACGCACTCACACAGGTGAGAAACCCTACCAGTGTGAATTCTGCGGTGCAACATTCAGCCAACGCAGCAATCTGCAGTCACATAAACGAGCCACACATTACCAGGATAAACGCTACAAGTGTGAAGATTGTGGTAAGGGCTTCAAGCGTCGCCGCCTGTTGGATTATCACGTCAAGGCCGCTCATACAGGTGAACGGCCATACAAGTGCCCTACATGTGATGCCACATTTGTGTACCCAGAACACTTCAAGAAACACCGCCGTATTCACACAGGTGAAAAACCATTTCGCTGTGAAGTGTGCGGGAAGGCATTCAACAGCCGTGACAATCGCAATGCACACCGTTTTGTGCACAGTGACAAGAAGCCATATGAATGCCTTGTCTGTGGCATGGGATTCATGCGGAAACCTCTGCTGTACAACCACATGCAATCACAAGGCCACCTGAATGATACCATTGTGGTGAATCAACCACGACTCGCTTCAGACGAAGATCTGGCTGCTGAGGCtgctgcagcagcagcagaagctgaagcagaagctgcagaattggagatGACGATTGTGGGAGATGATTCAGGTCATCACCAGGAGGAGACAAAGTTGTACATTGCTGAACTGAAGGAGCATGTAATCATTCAGCAAGATGGTGGTGACCGCTGTTATGCAGAAAAGACTGTTGTTATGGGCAGTGATGACTCAGATTTGAAGGATGGTAGTGAGCAGCACATAGTGCAAGAGGCTGTAGAACATCTGATTATTGATGGTCAGGTTCATTTTGCTGATCCTAATGAAATAGCTAACATCCATGCTGACATAGGTTCAGTAGCTGAGATCACCACCACCACATCCAGTTACGCGAGAGGAGGAGAGGGGCGTCACACCCTGGTCGTTCCAGCCACTCCTCATATGCTTTCCTCTGCAGGTTCAACGTATGATGAGGCCCATGGTGTGGCTGAAGATGGAACGGCTATTGCTGCTCTGGCACCTACACAGGCACTTCAAACTAATTCTGGCCCTGTTCACCTGGTGCAGATCAGGATTCCTGCATCTGAACATAGTAATCGAACATGGTTCAATATTGTAGAAAATCAGTAG
- Protein Sequence
- MTADTEKEQGTAPKSTHCLICNSRVGVSTRNSLEIFHKTIVTTSERPLSYTIGAVLGQEMSEDSVHSNVICKKCFKLINEVDEIETRLAELKLELTTNYQRTLKIQSDGGKHSPTLDDDDRKLPLGSDDGNVRKNILQGSRKKMVSKKMKPSSSHNSEEDYEQKENTLCEVELSEHDSDSDMNQDVIVTAKVGTEDDPDCEVKIKIEPDDDTDRENVAKRKMFKKKSQRLELQESEIPDKVVEKEGVDFVCLLCNGDEKILGDMKGMVNHLKSHHNIRIYICDICGQDFRKRNELSVHLDDHVATEEGDFQCEVCNRIFSNLRLFRVHKRMHYPQTKLWTCETCGKRYSSRNLLDEHINTHTGVRPYVCEACGKDFASKYTYKAHTKTHEVRPRPFSCGDCGKTFLSAQNLSQHERTHTGMRNYVCDQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYQDKRYKCEDCGKGFKRRRLLDYHVKAAHTGERPYKCPTCDATFVYPEHFKKHRRIHTGEKPFRCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQSQGHLNDTIVVNQPRLASDEDLAAEAAAAAAEAEAEAAELEMTIVGDDSGHHQEETKLYIAELKEHVIIQQDGGDRCYAEKTVVMGSDDSDLKDGSEQHIVQEAVEHLIIDGQVHFADPNEIANIHADIGSVAEITTTTSSYARGGEGRHTLVVPATPHMLSSAGSTYDEAHGVAEDGTAIAALAPTQALQTNSGPVHLVQIRIPASEHSNRTWFNIVENQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434996;
- 90% Identity
- iTF_01567206; iTF_00370387; iTF_00370386;
- 80% Identity
- -