Znev007121.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- Snai1
- Assembly
- GCA_000696155.1
- Location
- NW:394331-400228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00031 0.011 15.5 0.1 1 23 279 301 279 301 0.95 2 12 3.1e-05 0.0011 18.7 1.6 1 23 309 331 309 331 0.99 3 12 3.8e-05 0.0013 18.4 0.4 2 23 339 360 338 360 0.97 4 12 2.1e-05 0.00077 19.2 0.7 1 23 366 388 366 388 0.98 5 12 0.00066 0.024 14.5 1.0 1 23 395 417 395 417 0.98 6 12 4e-05 0.0015 18.3 0.0 1 23 423 445 423 445 0.94 7 12 3.2e-05 0.0012 18.6 0.3 1 23 451 473 451 473 0.98 8 12 9.3e-07 3.3e-05 23.5 1.2 1 23 479 502 479 502 0.96 9 12 1.5e-05 0.00054 19.7 0.5 1 23 508 531 508 531 0.95 10 12 6.4e-05 0.0023 17.7 2.2 1 23 537 559 537 559 0.99 11 12 2.1e-05 0.00074 19.2 0.6 1 23 565 587 565 587 0.97 12 12 0.00077 0.028 14.3 0.1 1 23 593 617 593 617 0.92
Sequence Information
- Coding Sequence
- ATGACTGCAGACACGGAAAAGGAGCAAGGTGCTGCTCCAAAAAGCACTCACTGTTTGATATGTAACAGTAGAGTTGGTGTCTCAACTCGTAATAGTCTTGAGATATTCCATAAAACTATAGTAACAACATCAGAAAGACCATTATCATATACCATTGGAGCGGTGTTGGGTCAGGAAATGAGTGAGGATTCTGTTCACAGTAATGTAATCTGTAAGAAGTGCTTCAAGTTGATTAATGAGGTTGATGAAATAGAAACTCGATTAGCAGAACTGAAATTTGAACTTACAACAAACTATCAGCGAACACTGAAAATTCAGAGTGATGGTGGAAAACAGTCACCAACACTGGATGATGACCGCAAGTTGCCTCTcggttctgatgatggaaatgTTAGGAAGAATAACCTACAAGGATCTCGGAAGAAACTTATATCAAAGAAAGTTAAGCCATCCCCCTCACACAACAGTGAAGAGGACTATGAACAAAAGGAAAATACTCTTTGTGAAGTGGAATTATCAGAACATGACAGTGACAGTGACATGAACGCAGATGTTATTGTAACTGCAGAAGTTGGTACAGAAGATGATCCTGATGgtgaagtgaaaataaaaattgaacctgatgatgacaTGGATAGAGAAAGTGTTGCTaaaagaaagatgtttaaaAGGAAACCACAAAGGCTGGAATTACAAGAATCAGAGATTCCAGATAAGGTAGTAGAGAAAGAAGGTGTAGACTTTGTATGTTtgctttgtaatggtgatgaaAAGATATTGGGAGACATGAAAGGAATTGTGAACCATCTGAAAAGCCACCATAATATCCGTATATACATATGTGATATATGTGGACAAGACTTTAGAAAGCGCAATGAACTATCTGTTCATCTGGATGACCACGTAGCAACTGAAGAAGGTGACTTCCAGTGTGAGGTTTGCAACCGAATCTTCAGTAACTTGCGTCTGTTCCGAGTGCACAAACGCATGCACTATCCACAAACAAAACTGTGGACTTGTGAGACATGCGGAAAGCGTTACAGCTCTAGAAATCTTCTTGATGAACATATCAACACCCACACAGGGGTTAGACCTTATGTTTGTGAGGCGTGTGGCAAGGATTTTGcatcaaaatatacatacaaagCACATACCAAAACTCATGAAGTGCGTCCTCGACCCTTCTCGTGTGGCGAGTGCAGGAAGACATTCCTGAGTGCTCAGAACCTATCACAGCATGAGCGTACACATACTGGCATGCGAAACTATGTTTGTGACCAGTGTGGTAAGGCATTTGGCACAGCACGCAACTTGGAAGTACATAGCGTGGTGCACTCTGGATATAAACCATTCATTTGTCGTACTTGTGGGAAAGCTTTTGCACGTAAGGCAGAGATTCGTGATCATGAACGCACTCATACAGGTGAGAAACCCTACCAGTGTGAGTTCTGCGGTGCAACTTTCAGCCAGCGCAGCAACTTGCAGTCTCATAAACGAGCCACACATTACCAGGATAAACGCTATAAGTGTGAAGATTGTGGTAAGGGCTTCAAGCGTCGCCGCCTTTTGGATTATCATGTCAAGGCTGCTCATACGGGTGAACGTCCATATAAGTGTTCTGCATGTGATGCCACGTTTGTGTACCCAGAACACTTCAAGAAACATCGTCGCATTCATACAGGTGAGAAACCATTTCGCTGTGAAGTATGTGGCAAGGCATTCAACAGCCGTGACAATCGCAATGCACATCGGTTTGTGCACAGTGACAAAAAGCCATATGAATGCCTTGTTTGTGGTATGGGGTTCATGCGGAAACCTCTACTGTATAATCATATGCAGTCACAAGGTCACCTGAATGATACCATTGTGGTAAATCAACCACGACTTGCTTCAGATGAGGACCTGGCAGCTgaggcagcagcagcagcagaagcAGAGGCAGAAGCTGCGGAAGTAGAGATGACAATTGTGGGAGATGATTCGGGTCACCACCAAGAACAGGAGACCAAGTTGTACATCGCTGAACTAAAAGAGCATGAGAAGACTGTCATGGTTGGCAGTGATGACTCAGATTTAAAGGATGGTACTGAGCAACACATGGTGCAAGAGGCTGTAGAACATCTCATCATTGACGGTCAAGTTCATTTTGCTGATCCTAATGAAATAGCCAACATCCATGCTGATATAGGGTCAGTAGCTGAGATCACCACCACAACATCTAATTATGTGAGAGGTGGGGAAGGACGTCATACGCTGGTAGTTCCAGCCACCCCTCACATGCTTTCCTCTGCAGGTGCGACATTTGAGGATGCTCAGGGTGTGGGTCATGATGGAACAACGATTGCTGCTCTAGCACCTACACAGGCTCTTCAGACAAGTTCTGGCCCTGTGCACCTGGTGCAGATCAGGATCCCTGCGTCTGAGCATGGTAATCGAGCATGGTTCAATATTGTGGAGAATCAGCAGTGA
- Protein Sequence
- MTADTEKEQGAAPKSTHCLICNSRVGVSTRNSLEIFHKTIVTTSERPLSYTIGAVLGQEMSEDSVHSNVICKKCFKLINEVDEIETRLAELKFELTTNYQRTLKIQSDGGKQSPTLDDDRKLPLGSDDGNVRKNNLQGSRKKLISKKVKPSPSHNSEEDYEQKENTLCEVELSEHDSDSDMNADVIVTAEVGTEDDPDGEVKIKIEPDDDMDRESVAKRKMFKRKPQRLELQESEIPDKVVEKEGVDFVCLLCNGDEKILGDMKGIVNHLKSHHNIRIYICDICGQDFRKRNELSVHLDDHVATEEGDFQCEVCNRIFSNLRLFRVHKRMHYPQTKLWTCETCGKRYSSRNLLDEHINTHTGVRPYVCEACGKDFASKYTYKAHTKTHEVRPRPFSCGECRKTFLSAQNLSQHERTHTGMRNYVCDQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYQDKRYKCEDCGKGFKRRRLLDYHVKAAHTGERPYKCSACDATFVYPEHFKKHRRIHTGEKPFRCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQSQGHLNDTIVVNQPRLASDEDLAAEAAAAAEAEAEAAEVEMTIVGDDSGHHQEQETKLYIAELKEHEKTVMVGSDDSDLKDGTEQHMVQEAVEHLIIDGQVHFADPNEIANIHADIGSVAEITTTTSNYVRGGEGRHTLVVPATPHMLSSAGATFEDAQGVGHDGTTIAALAPTQALQTSSGPVHLVQIRIPASEHGNRAWFNIVENQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434996;
- 90% Identity
- iTF_00396535;
- 80% Identity
- -