Dero014175.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- -
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020029957.1:1-3663[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.6e-06 0.00085 20.0 1.9 1 23 378 400 378 400 0.97 2 18 3.9e-05 0.0039 17.9 1.8 1 20 406 425 406 428 0.94 3 18 8.2e-06 0.00081 20.0 3.0 1 23 434 456 434 456 0.98 4 18 4.1e-06 0.0004 21.0 3.5 1 21 462 482 462 484 0.94 5 18 1.9e-05 0.0019 18.9 4.6 1 23 490 512 490 512 0.99 6 18 1.8e-05 0.0018 18.9 5.3 1 23 518 540 518 540 0.97 7 18 2.1e-06 0.0002 21.9 6.0 1 23 546 568 546 568 0.98 8 18 7.1e-08 7.1e-06 26.5 2.7 1 23 574 596 574 596 0.98 9 18 5.3e-05 0.0052 17.5 6.7 1 23 602 624 602 624 0.97 10 18 8.5e-06 0.00084 20.0 5.5 1 23 630 652 630 652 0.97 11 18 3.4e-07 3.4e-05 24.4 2.8 1 23 658 680 658 680 0.98 12 18 4.8e-06 0.00047 20.8 7.9 1 23 686 708 686 708 0.98 13 18 2e-05 0.002 18.8 9.1 1 23 714 736 714 736 0.98 14 18 1.2e-05 0.0012 19.5 7.7 1 23 742 764 742 764 0.98 15 18 9.1e-07 9e-05 23.0 4.7 1 23 770 792 770 792 0.97 16 18 2.5e-05 0.0024 18.5 0.9 1 23 798 820 798 820 0.98 17 18 0.019 1.9 9.5 5.1 1 23 830 852 830 852 0.98 18 18 0.013 1.3 10.0 0.0 1 15 858 872 858 874 0.86
Sequence Information
- Coding Sequence
- ATGAATTCTGATCAAGTGGATTCCCTTAGTGGGACGCAACATCCAAACAACAATGAGACAAATGAAAGCACGCAAAGGCCTCCACCTACAACAACATCAGCGACGGATCTTCGAGTAAATACAACCGCTTTGAATGCAGTGGCACTAAGCAGCGTCGCAAAATATTGggtattaactaatttattaccTGGACCTATACCGCAAGTATCAGTTTATGGCCTACCAAGTTCGACACGCTTAGAAAACCAGAACAAAAACTCGCAGgaaTCAATGCTATCGCAGCATGGAAGTTTAATATCAGCTGATAATATTCTTTTATCACACAATTCGCAAATTCCAGTATCAAGCGCAATGCATATCGAAACTCAACAATTGCAGCAACAGCAATCGGATAACcaaaatatgcaaatgcaacaacaatcacagcagcaacagcaacaacaaaatatggTTCAAGTGCAAGTGCAGGACAATTTGGTGAGTGTCATCGATGACAATAAGGACCACAAGGATTTGCTTGTCAATCAATTGGcgcaattaaatgaaaatcagcAATTAGCGCAGCAGCAGGCGCTCACTGTGCAACAGTTGCAGCAATTACAAGTTCAGCAAGTTCTTGATAATGTTGTACGTATGGAAAGCGGCGAACATGGCCAGAATAGCGACGATCCATTAAGCGATGGAATGCAAATCAAAGATGAAAAAGTTTTGCAGAGTTGCACGAAACTTCTAAGCGCTCAATTCGGTTTGCAGGATGTTAAAGCGAATTTAATGGATGTTAGGACTGCTGATGGGAGTATTGTTAAAATATCAGCCGGTTTGCAAGATCAGGATTTGGCGAAGAGTATTGGTGTGGAGATGGTACAGAATATGTATAAAGTGAATGTGGatgatataaatcaattatttgcgTATCATGAGGTGTTTGGGAAGCTGCAAGGTGAAATAACAGGAGCAACCACTTCAACAACGACGAACAATTTAATTCAGCCGACGAATAATACGAATGTAAGCTTACAGAATAATGTTGGCAATATTGCTGTGGTTGCGAAAGTAATGGACGGTGAGCAGGAAGCTTCAACAAGTGGAATGAATAATACGGAAAGCCCACCAGCTGTTATAGCAGGCACGCATGTTTGTGATATATGCGGTAAGATGTTCCAATATCGGTATCAGTTGATTGTGCATCGTCGTTACCATACTGAACGTAAGCCGTTTACGTGCCAGGTGTGCGGTAAAGCGTTTACCAATGCGACCGAATTGAGCCGACATGGAAAATGTCATCTAGGTGGTAGTATGTTTACTTGTAGCATTTGTTTTCATGTTTTTGCCAATAATCAGTCGCTTGAGCGTCATATGAAGCGACATTCAACTGATAAACCGTACGCGTGTACTATATGCGGTAAATCGTTCGCTCGGAAAGAGCATTTAGAGAATCATACACGCTGCCATACTGGTGAGACGCCGTATCGATGCCAATATTGTGCAAAAACGTTCACCCGGAAGGAGCATATGGTGAATCATGTTAGGAAGCATACGGGCGAGACGCCGCATCGATGTGAAATATGTAAGAAATCGTTCACGCGCAAAGAGCATTTTATGAATCATGTGATGTGGCATACTGGAGAGACGCCGCATCAATGCACCATCTGCCAAAAGAAGTACACGCGCAAAGAGCATCTCGCCAATCATATGCGCTCACATACTAATGATACGCCATTCAGATGTGAAATATGCGGTAAGTCGTTTACGCGCAAAGAGCACTTCACGAATCACATTATGTGGCATACTGGGGAGACGCCTCATCGCTGCGATTTCTGTTCAAAGACATTTACACGAAAAGAACATCTACTTAATCATGTCCGACAACACACTGGCGAATCTCCTCATCGTTGCGCGTATTGTTCAAAAAGCTTCACTCGTAaagaacatttaattaatcatgtACGACAACATACCGGCGAGACTCCATTTCGTTGTAGTTATTGTCCGAAAGCTTTTACGCGCAAAGACCATCTTGTTAATCATGTCAGACAGCATACGGGTGAATCGCCACACAAATGCACCTATTGTACGAAAAGTTTTACGCGAAAGGAGCATCTGACAAATCATGTTAGACAGCACACCGGCGAATCGCCGCATCGTTGTCATTTCTGTTCGAAGAGCTTTACAAGAAAAGAACATCTTACGAATCATGTTAGGATACATACTGGCGAATCGCCGCATCGTTGCGAATTCTGTCAGAAGACGTTCACTAGAAAGGAACATCTCACCAATCATCTGCGACAGCATACGGGCGAAACGCTTCACAATTGCACGATATGCTCGAAACCATTTACGCGCAAAGAGCATTTAATCAATCACATGCGTTCACATACAggtGAACGTCCATTTACGTGTACTGAATGTGGGAAATCATTCCCGCTTAAAGGTAATCTATTGTTTCATCAACGTTCGCATAATAAAGGTGCTGATGCGGATCGTCCATTCCGTTGCGATTTGTGCGATAAGGATTTCATGTGTAAGGGACATTTGGTGTCACATCGACGATCACATAGCGGAGAACGACCACATGCATGTCCTGATTGCGGAAGAACGTTCGTGGAGAAAGGAAATATGTTaag
- Protein Sequence
- MNSDQVDSLSGTQHPNNNETNESTQRPPPTTTSATDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPSSTRLENQNKNSQESMLSQHGSLISADNILLSHNSQIPVSSAMHIETQQLQQQQSDNQNMQMQQQSQQQQQQQNMVQVQVQDNLVSVIDDNKDHKDLLVNQLAQLNENQQLAQQQALTVQQLQQLQVQQVLDNVVRMESGEHGQNSDDPLSDGMQIKDEKVLQSCTKLLSAQFGLQDVKANLMDVRTADGSIVKISAGLQDQDLAKSIGVEMVQNMYKVNVDDINQLFAYHEVFGKLQGEITGATTSTTTNNLIQPTNNTNVSLQNNVGNIAVVAKVMDGEQEASTSGMNNTESPPAVIAGTHVCDICGKMFQYRYQLIVHRRYHTERKPFTCQVCGKAFTNATELSRHGKCHLGGSMFTCSICFHVFANNQSLERHMKRHSTDKPYACTICGKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCTICQKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETLHNCTICSKPFTRKEHLINHMRSHTGERPFTCTECGKSFPLKGNLLFHQRSHNKGADADRPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPDCGRTFVEKGNML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196965; iTF_01400583; iTF_00369694;
- 90% Identity
- -
- 80% Identity
- -