Patr021556.2
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000334.1:42173-52490[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00014 0.043 17.1 2.4 1 23 366 388 366 388 0.97 2 18 5.2e-05 0.017 18.4 1.2 1 20 394 413 394 416 0.94 3 18 1e-05 0.0032 20.6 1.4 1 23 422 444 422 444 0.98 4 18 5.2e-06 0.0016 21.5 4.4 1 21 450 470 450 472 0.95 5 18 4.1e-05 0.013 18.7 4.6 1 23 478 500 478 500 0.99 6 18 3.9e-05 0.012 18.8 5.3 1 23 506 528 506 528 0.97 7 18 4.1e-07 0.00013 25.0 5.0 1 23 534 556 534 556 0.98 8 18 1.5e-07 4.8e-05 26.4 2.7 1 23 562 584 562 584 0.98 9 18 0.00011 0.036 17.3 6.7 1 23 590 612 590 612 0.97 10 18 1.8e-05 0.0058 19.8 5.5 1 23 618 640 618 640 0.97 11 18 7.2e-07 0.00023 24.2 2.8 1 23 646 668 646 668 0.98 12 18 1e-05 0.0032 20.6 7.9 1 23 674 696 674 696 0.98 13 18 4.3e-05 0.014 18.6 9.1 1 23 702 724 702 724 0.98 14 18 2.6e-05 0.0084 19.3 7.7 1 23 730 752 730 752 0.98 15 18 1.7e-05 0.0054 19.9 7.1 1 23 758 780 758 780 0.97 16 18 5.3e-05 0.017 18.4 0.9 1 23 786 808 786 808 0.98 17 18 0.04 13 9.3 5.1 1 23 818 840 818 840 0.98 18 18 3.6e-06 0.0012 22.0 0.8 1 23 846 868 846 868 0.96
Sequence Information
- Coding Sequence
- ATGAATTCCTCAGAGAATAATCCTCTGACGCAAACGTCCAATCAGAATGAAGTTTCACAGCGTCCACCGCCTACAACCACCTCAGCTGCTACTGATCTTAGAGTTAATACGACAGCTTTAAATGCTGTGGCTTTAAGCAGTGTGGCTAAATATTGGGTTTTGACCAATCTGTTGCCGGGACCAATTCCTCAAGTTTCTGTCTATGGACTTCCTGGCACCAAACCTGACAACCAACCAAAAGTCTCCCAGGAGTCGATGATTCCTCAGCACGGTAACCTAATAAACCCCGAAAATGTCCTCCTCTCCCACAATTCTCAATCCTCCAATCAACTTTCAATCCCAACCAGTATGCACTTGGAAACCCAGCAAAATGGCCATCAAATTTCTGAAAATCTTCCACAACACAACCAAATTCAGAATCAAAATATGGTGCAGGTCCAGGTTCAAGACAACATGGTCTCTGTCATTGAGGACAATAAAGAACAGAAGGATTTGATAGCTTCACAGCTTGTGCAAGCACAGTTGCATTTGAATGAAGGACAACAGTTAGGGCAGCAGGGATTGACTGTGCAACAGCTGCAACAATTGCAAGTTCAACAGGTCTTGGATAATGTCGTTAGAATGGAAGCTGGAGAACAGGGACAGAATCCTGATGATCCTATGAGTGATAATATGCAGATTAAGGATGAGAAAGTATTGCAAAATTGTACTAAATTACTAAGTACACAATTTGGATTACCTGATATTAAGGGTAATTTAATGGACGTTAGGACTGCTGATGGAAGTATTGTTAAAATTTCTGCAGGATTACAAGATCAGGATTTAGCAAAGACATTAGGAGCTGAGATGGTCCAAAACATGTACAAAGTAAATGTAGATGATATTAATCAACTTTTGGCTTACCATGAAGTTTTTGGAAAGTTACAAGGAGAAATTAGCAATGCTGCCACAGGGAATTTGGTCCAAAACACCAGTGTTAATATACAAGGCAATGTAAATAATTTAACTGCTGTCCCTAAGGTTTTAGACAACGAGCAAGAGGCTTCAACTAGTGGTCTTAGTACAGATAGTCCACCAACAGTCATCACAGGTACTCATGTTTGTGATTTATGTGGAAAAATGTTCCAATTTCGCTATCAACTCATCGTCCATCGTCGTTATCACACCGAACGAAAGCCTTTTACCTGTCAAGTATGCGGTAAAGCTTTCTCTAATGCTGCGGAACTCAGCCGCCATGGAAAATGCCACCTGGGCGGTAGCATGTTCACCTGCACAGTCTGTTTCCACGTTTTTGCCAATGCAGCCTCCTTGGAACGCCATATGAAGCGCCATTCCACCgacaaaccatacacatgcacaatatgtggaaaatcgttcgctcgaaaagaacatttagaaaatcataccaggtgccatacaggtgaaacaccttacaggtgtcagtattgtgcaaagacatttactaggaaggagcatatggtaaatcatgtgcgaaaacatacgggtgaaacgccgcataggtgcgagatatgcaaaaagtcgtttactaggaaggaacattttatgaatcacgtgatgtggcatactggcgaaactccacatcaatgtaccatttgtgggaaaaaatatacaaggaaggaacatcttgccaatcacatgaggtctcatactaatgacacaccttttagatgtgaaatatgtggtaaatcatttaccagaaaggaacattttacgaatcacattatgtggcatacaggagaaacccctcaccgctgtgacttctgctctaaaactttcactcggaaagagcatcttctaaaccacgttcgacaacacactggagaatctccccatcgatgcgcatactgctcgaaatcctttacgcgcaaagaacatctcattaatcacgtccgccaacataccggagaaacgccttTCCGATGCAGCTATTGTCCGAAAGCCTTCACACGTAAAGACCATTTAGTAAACCATGTCAGACAacatactggagaatctcctcataagtgcacttattgcacgaagagctttacgcggaaggagcatttaacaaatcacgtgaggcaacatacaggtgagtcacctcatcgctgtcacttctgctcgaagagttttacaagaaaggagcacttaacgaatcatgtgaggatacatactggcgaatctccgcataggtgtgagttttgtcaaaagacttttacgagaaaggaacatcttacgaatcatttgaggcaacacactggagaaacacctcattgttgtaacgtttgttccaaaccttttaccaggaaagaacatctcatcaatcatatgagatctcacacagGGGAACGGCCATTTACATGTACAGAATGCGGGAAATCTTTTCCTCTGAAAGGAAACCTTCTTTTTCATCAGCGGTCACATAACAAGGGTGCAGCGGCGGATAGACCGTTCCGTTGCGATCTTTGTGATAAAGACTTCATGTGTAAAGGCCATTTGGTTTCACATAGAAGATCCCACAGCGGGGAAAGGCCCCACGCTTGTCCAGAATGCGGCAGGACATTCGTGGAAAAAGGCAACATGTTAAGACATTTACGTAAGCATTCAGATAATAGTCTCCAGGGTGGTGCGAATCAGGTGGTGCAAGAAGGTGGTGCTGCTGGTACGGTAGTTCAAAATCAGACGCCGGCATCGTCTGCATCGCAGGGCAGTGTCGCGAATGTGCAACTTCCGCAAGTATCTCAGGCTCCAATGGCTGCGAGTCCTGTTACAACCGGTTCAATAGTGCAACAGACTTTGCAGAACATGCACCAACAAAACCCACATCCGGTTGTTGTGCCGACAGCCAATGGTAATGTTCTTGCATCATATTAA
- Protein Sequence
- MNSSENNPLTQTSNQNEVSQRPPPTTTSAATDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTKPDNQPKVSQESMIPQHGNLINPENVLLSHNSQSSNQLSIPTSMHLETQQNGHQISENLPQHNQIQNQNMVQVQVQDNMVSVIEDNKEQKDLIASQLVQAQLHLNEGQQLGQQGLTVQQLQQLQVQQVLDNVVRMEAGEQGQNPDDPMSDNMQIKDEKVLQNCTKLLSTQFGLPDIKGNLMDVRTADGSIVKISAGLQDQDLAKTLGAEMVQNMYKVNVDDINQLLAYHEVFGKLQGEISNAATGNLVQNTSVNIQGNVNNLTAVPKVLDNEQEASTSGLSTDSPPTVITGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNAAELSRHGKCHLGGSMFTCTVCFHVFANAASLERHMKRHSTDKPYTCTICGKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFTCTECGKSFPLKGNLLFHQRSHNKGAAADRPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPECGRTFVEKGNMLRHLRKHSDNSLQGGANQVVQEGGAAGTVVQNQTPASSASQGSVANVQLPQVSQAPMAASPVTTGSIVQQTLQNMHQQNPHPVVVPTANGNVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00430030;
- 90% Identity
- -
- 80% Identity
- -