Ccal023156.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012706.1:9178235-9182897[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.02 4 9.5 2.0 1 23 356 378 356 378 0.95 2 19 0.031 6.3 8.9 0.6 2 23 421 442 420 442 0.95 3 19 0.003 0.6 12.1 0.6 1 23 518 540 518 540 0.92 4 19 0.0086 1.7 10.7 1.2 1 23 544 566 544 566 0.97 5 19 1.3e-05 0.0025 19.6 0.4 2 23 660 681 659 681 0.97 6 19 4.1e-05 0.0083 18.0 3.1 3 23 688 708 686 708 0.96 7 19 0.00087 0.17 13.8 0.3 1 21 714 734 714 738 0.92 8 19 0.0001 0.021 16.7 3.4 1 23 821 843 821 843 0.97 9 19 5.8e-05 0.012 17.5 3.9 1 23 911 933 911 933 0.97 10 19 0.00064 0.13 14.2 1.1 1 20 938 957 938 959 0.94 11 19 0.0017 0.35 12.9 0.4 2 23 970 991 970 991 0.96 12 19 1.5e-05 0.0031 19.3 0.7 2 23 1028 1049 1027 1049 0.97 13 19 3.1e-05 0.0062 18.4 1.6 1 23 1054 1076 1054 1076 0.95 14 19 0.00024 0.049 15.6 1.8 1 23 1082 1104 1082 1104 0.98 15 19 5.4e-06 0.0011 20.7 0.4 1 23 1120 1142 1120 1142 0.95 16 19 1.7e-06 0.00035 22.3 0.3 1 23 1148 1170 1148 1170 0.99 17 19 2e-05 0.0041 18.9 0.4 1 23 1176 1198 1176 1198 0.98 18 19 0.00018 0.036 16.0 4.1 1 23 1204 1226 1204 1226 0.96 19 19 0.0075 1.5 10.9 0.7 1 20 1232 1251 1232 1253 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGATTGATACGGCGGAGGGTCCTCAAGACGAAGATGCCATAGACGCGACAGTACCCGAGGTCTGTCGGGTTTGTCTGCTGGGGAATTTAATGATGAGGAATCTCTTCGTGGAAAATGTGGTCGTCTCCCTGTCGACGAAAGCCATGAGCTTCGCTAGTGTTAAGATGCTACCAGGAGACGGCCTCCCTGGACAAGTGTGTTGCGACTGCGCAGACAAATTAGATTCCGCGTATGAGTTTAAACTCCAAGTTGAACAAGCAGACAGTGTACTCAGACAGAGATTCGATTCGCTGAATATCAAAGAGGAGCTTTTCTTTAATGAAGTTGAAGTGCACTTGGAGGGAGAACGGGGCGACGACGTACATACTCTTGAGGTAGACGAACATTATCAAGCTACTGTGGATAGTTTGACCACAACTGAAGCTGGCGATGAGAAAACTACGCTTCTCAAGGATCACTTGGCTCTGTTACAAGTTCAAAAGCTAGCTGATGAACAATGTTGCACAGTTGTCGAAGAAAAGCATGCTGACGAAATTGAAGCGGAACCCAATGTGGTCGGTATTCTCGAATCTACTGGAGAGCACAGTGGGTATCTACACGAAAATGAGGGAAACAATGTAGAAATTGTTGATTGCGAGGTGTACAGACAATCGGTAAAAGCGGAAGGCATGCACGATATCGAAGGAATACCAATTGACGAGCACAATTATATAATGCAGCAAGGATACACGTTGGCGAGGACCGAGGATGACCTAGAGGCTCAAGAGAGCGTGGATTCGGGTGCTCACGAGTCCGCCGAGTACTTGTCGCTGATGGACGAAGAGATGAACACAAAAGACGAACCGAACCCAGCGGAATCGTTAGATTACATAAAAACCGAAGAACAACAGCAGTCCACGAGCGAAAACCTCGAGAATTCACCGAGCGAAACGCGCCGAAGCAAACGCAAATTGATAAAACGAGTTCGAAACACGGACGAGGAAAGTTACTTCGAGAACCTAAATCTAAGCAGCAGATTAAAAAAGACGCAggaaaaaacggaaaaaatttatttcctaTGCTATCTCTGTGACAAGCAATTTATATCGAAGGAGATATTGAAAGAGCACATGCACTCTCACGAGGAGGTGAGACGAACGTTATCGTTGAAAAAATCTGAAAAGCTGGAAAAGCGACAGAGTCCGACAAAAGCTGCAGTCGCGGGAGTTTCTTCAACGTCCTCGACGTCATCCGGCAAAAAGCCCAACAAATGTCCGTACTGTGGCAAAGAGTATCTTTATGTAATATCATTTAACAAGCATCTCAAGCAGCATGAGAGAAACAAAGATTCATCGAAAGACGCCTCGTTGATTTCGTTCGAAGAATCGAttcacgacgacgacgaagacgacgacgactcgATCGATTTTGTGGGTTACGAGGACAATCGAGCCTCCGACACGAACAGTCGAGTCGAGCGAGCAAACGAGGGCGAGGAAAGCGAGGAAACAAGTCCGGAGAGAAGCAAGCGAAGGCGAGTTGGACGATCGGACGTCACATACTCGTGCGACAAGTGTCCACAAAAATTTACGACAAAAAGAATGCTCGGTGAACACAGCATCGAGCACAACACGAGCTTCAAATGTAGCACCTGCGAGCAAGATTTCGACGAGCTCGAAAAACTGCGACGGCATCGGTCGGAGCACGTGGTAGACGGAGTTTTGTCGGAGCAGGATCTTGAGGATAACGTTTACGAACGAGAGTTTGATGCCGTAGCCCCGGATGACGGGGTGGATATTTACGGGGGTGAGGAGGGacgagagatgcatctggaagccGCGGGCCAGGAGCAGGTTGACTCGCAATTGGGAGATGGGAACGAGAGTGACTGGCGCTTGGAAGTACAGACGGAAGATTATGAGAGTTCTGAATGCAGGGAAAAAGTCGACGAAATCGACGCAAGTTGGTCGAAATCCAAGGACCTCAAATGTCCCAATTGCCCGATGACTTATTCTCAAAAAAAATCCCTGGCGCGACACATCGAGAGCCACGAGGGCACTACGTACGGTTGcaagatttgcaagcaaaaattcaCTAGGAAGGATCATCTGCAGCGGCACGTAGAGCAACACGGGAAAACCAAAACTTACAAGTGCACGGAATGCAACAAAATCTTTGGCAATGAGTTGACGTTGAGGAATCATCTCATAGCGACGAATCACAAGACTGTAGTGCACGGGGAGGCCTATGATCCGAACAAGCGATTGAAGCGCGTAGCTGCAAAAGCAGCGCAGAGAATAATCGATAAGATAAAAACGGAGGACGGTCTGGAGGAGtacgaggaggaagaggaggcgaCGGAGGGCAGAAACTCGAAGGGTAACGTGCGATGGGCTCGAAACGACGAGAAAGTGCACCCGACCGCTTCGGCGCGAAAGGTCCAGCATCGCAATCGACGGAGATCCGATTTCGAGTGCGAAACTTGCGGGAGAAAGTGCAGCTCCAAGCAGTCGTTGTCGAAGCACATGGAGCAGCATCGCGTTAAGGAACTAAAATCGGAGACTTCGGTAAAGAAcgaaaaaggaaagaaaaatagtttACTCGAAGGGAGCGATAGATCGGCTTGCGGAACTCAGAAAATAAGCTCCAGCCAGGAGGATAAAACAGAGGAGAACGAggaggacgatgacgacaaTAATTCGGACTTTGAGAGCGGTCTTGATTGGCCGATGGATAATCACGAGTGTCCaacttgcaaaaaaaaatacagcacCAAAAAATCGTTGCTTCGTCATCAATTACTTCACGAAGAGCCGAACTTCGAGTGCGACATATGCAATGTGAAATTTTATCGAAAGGACAAGCTCAAGTCGCACTACGACAAATGCTCGGAGAAGAATCCGGATCAAGTGAGAAAATGCAATATCTGCGGGGACAGCTTCGAGAATAATGAGCTGTTGAAAGAACACAGGGGAAAGCACGTGGACGAGGGAATTTTAACGGAGGAGGATCTCAGAGAGATCGAACCTGACGAGAGAAAAGAAGGCGGAAAAGTCGCGCGGAAACGACGAACCGACATTGTGGGCCTCGAATGCACAGAATGCAATAAACGGTACACCTCTCGCAAGGGACTCCTTCGACATATACAGGTACACGAAGGGAAAAAGTATCTCTGCGATATATGCCCGAAAAAGTTTTACCGTCGTGAGCATCTGAAGATTCACGTTGCCAAGCACAACATGATAAAGCCGTACAAGTGTTCTCGTTGTACGAAGCGGTTCATAAAAGAGGAACAGCTGGCGAATCATCTGTCGAAGCACGATCGTACCTTCAAAAAGACGAAAGAGACTGACAGTTCGAAAAGATTTCTGTGCGAGATTTGCTCCAAGAGTTTCACACAGTCTACGACACTGATAGCACATCTTCGAGCTCACAATGGGATAAAACCTTACGTCTGCGAGGTCTGCGCTCGTCCCTTTACGACGAACGCTTATCTCAAGATGCACATGAGGACTCACACGCAAGAACGACCCTACACCTGCCAATATTGCACGCGGGCATTCGCCCGAGCGGATACACTCGCCAATCACTTGACCTCGCACACCGGAGAAGCTAAATATCACTGCAAGTACTGCCCGAAGAACTTTCGACGACTAAAGTCCCTCAAAGAGCACGTGTTCATCCACACGGGCCAACGACCGTATTCCTGCCCAACCTGCGATCGTCGCTTCAACAACAATGGTAGTCGCTACGCTCACAGCAAGCGATGTAAACAGAATCTCCTTCAGAATCAGAATCGCACCCAAACAATACCTCAAGCGATAGTACAGAGCGCTCCCCAATCCATAAGGATACATCAGATAACCAGCGATCACGGAGCGCAGATGCAGGTCTTAAAATCGCAGAATATCAAGACGATAACTATCGCCAGACCCGGCGATCAGGTTATGCAACATCAGGAAATACTCATGCCACTGATTCTACCCCTTACCGTCACCCTCACTGATGTTGACGAGGAAGTTATTCTACCGGAGGGCACCAAGATATTTACCACTGCTTAA
- Protein Sequence
- MDAVEIDTAEGPQDEDAIDATVPEVCRVCLLGNLMMRNLFVENVVVSLSTKAMSFASVKMLPGDGLPGQVCCDCADKLDSAYEFKLQVEQADSVLRQRFDSLNIKEELFFNEVEVHLEGERGDDVHTLEVDEHYQATVDSLTTTEAGDEKTTLLKDHLALLQVQKLADEQCCTVVEEKHADEIEAEPNVVGILESTGEHSGYLHENEGNNVEIVDCEVYRQSVKAEGMHDIEGIPIDEHNYIMQQGYTLARTEDDLEAQESVDSGAHESAEYLSLMDEEMNTKDEPNPAESLDYIKTEEQQQSTSENLENSPSETRRSKRKLIKRVRNTDEESYFENLNLSSRLKKTQEKTEKIYFLCYLCDKQFISKEILKEHMHSHEEVRRTLSLKKSEKLEKRQSPTKAAVAGVSSTSSTSSGKKPNKCPYCGKEYLYVISFNKHLKQHERNKDSSKDASLISFEESIHDDDEDDDDSIDFVGYEDNRASDTNSRVERANEGEESEETSPERSKRRRVGRSDVTYSCDKCPQKFTTKRMLGEHSIEHNTSFKCSTCEQDFDELEKLRRHRSEHVVDGVLSEQDLEDNVYEREFDAVAPDDGVDIYGGEEGREMHLEAAGQEQVDSQLGDGNESDWRLEVQTEDYESSECREKVDEIDASWSKSKDLKCPNCPMTYSQKKSLARHIESHEGTTYGCKICKQKFTRKDHLQRHVEQHGKTKTYKCTECNKIFGNELTLRNHLIATNHKTVVHGEAYDPNKRLKRVAAKAAQRIIDKIKTEDGLEEYEEEEEATEGRNSKGNVRWARNDEKVHPTASARKVQHRNRRRSDFECETCGRKCSSKQSLSKHMEQHRVKELKSETSVKNEKGKKNSLLEGSDRSACGTQKISSSQEDKTEENEEDDDDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDSFENNELLKEHRGKHVDEGILTEEDLREIEPDERKEGGKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCSRCTKRFIKEEQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYTCQYCTRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYSCPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRTQTIPQAIVQSAPQSIRIHQITSDHGAQMQVLKSQNIKTITIARPGDQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343335; iTF_00653021; iTF_01497639;
- 90% Identity
- -
- 80% Identity
- -