Tlin021581.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453046.1:11322212-11331105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.072 9.2 7.7 2.5 1 23 362 384 362 384 0.95 2 19 0.03 3.9 8.9 0.6 2 23 429 450 428 450 0.95 3 19 0.013 1.7 10.1 0.2 1 23 523 545 523 545 0.92 4 19 0.018 2.3 9.6 0.8 2 23 550 571 549 571 0.95 5 19 4.8e-06 0.00062 20.8 0.4 2 23 666 687 665 687 0.97 6 19 9e-06 0.0012 20.0 3.4 1 23 692 714 692 714 0.96 7 19 0.0011 0.15 13.4 0.4 1 21 720 740 720 744 0.92 8 19 7.5e-05 0.0097 17.1 3.7 1 23 828 851 828 851 0.95 9 19 5.7e-05 0.0073 17.5 3.9 1 23 918 940 918 940 0.97 10 19 0.00062 0.08 14.2 1.1 1 20 945 964 945 966 0.94 11 19 0.0019 0.25 12.7 0.5 2 23 977 998 977 998 0.96 12 19 1.5e-05 0.0019 19.3 0.7 2 23 1035 1056 1034 1056 0.97 13 19 3e-05 0.0038 18.4 1.6 1 23 1061 1083 1061 1083 0.95 14 19 0.00023 0.03 15.5 1.8 1 23 1089 1111 1089 1111 0.98 15 19 5.3e-06 0.00068 20.7 0.4 1 23 1127 1149 1127 1149 0.95 16 19 1.7e-06 0.00022 22.3 0.3 1 23 1155 1177 1155 1177 0.99 17 19 2.2e-05 0.0028 18.8 0.3 1 23 1183 1205 1183 1205 0.98 18 19 0.00017 0.022 16.0 4.1 1 23 1211 1233 1211 1233 0.96 19 19 0.0073 0.94 10.8 0.7 1 20 1239 1258 1239 1260 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGATAGATACGGCGGATGGAGCTCAAAACGAAGATGCCATAGAGGCGACAGTGCCGGAGGTTTGTCGAGTTTGTCTGCTGGCTAATTCAATTATGAGGGATCTTTTTGTGGAGAACGAGGTCGTCTCCCTGTCGACGAAAGCCATGAACTTTGCCAGTGTCAAGATGATGCCAGGAGATGGTTTACCTGGACAAGTTTGTTGCGACTGTGCTGACAAATTGGATTCGGCGTATGAGTTCAAACTTCAGGTTGAACAAGCCGATAATGTACTTAGACAAAGATACTATTCACTCAATATCAAAGAAGAGCTTTTCTTTAACGAAGTCGAAGTGCATTTGGAGGGCGAACGGGAAGACGATGTACATACTCTAGAAGTCGATGCACATTATCAAGCTACCGTCGATAGCTTAACCGCCGGTGACGCCGAGGATGCAAAACCTGGGCTTCTCAAGGATCATTTGGCTCTGTTACAGGTTCAGAAACTCGCAGAGCAAGAATGCGCCGTGCCTGTTGACGAAAAGCATACTGTCGAAATTGTGGAGGAATCGACCGTCGCGAGTATTCTCGAATCCAGTGAAGAGCATGGTCAATATCTGCACGTAAACGGAGGTAACAATGATGATCTGGGGGATTGTGAGGTGTACAGAAACCCGGTGAAAGCGGAAGGTCTGCACGACATCGAAGGAATTCCAATCGACGAGCACAACTACATAATGCAGCAAGGATACACATTAACAAGAGCCGAGGAGGAACTGGAGACTCAAGAGAGCGTAGATTCCGGTGCTCATGAGTCCGCCGAATACTTGTCTTTAATCGACGAAGAGATGAACGCAAAAGACGATACAAATCCGAAAACATTGGAACCCACAAAAAGCGAAGACCAACAACAAGGTGAAAACATTGAACAACAGCCCAAAGATGAAAATGTTGACAATTCGCCGAGCGAAATGCGGCGCAGCAAACGCAAACTGATGAAACGCAGTCGAAACACCGACGAAGAAAGTTATTTCGAGAATCTGAACCTAAGCAGTAGATTGAAAAAAACGCAtgataaaatggaaaaagtttatttcctGTGTTATCTCTGCGATAAGCAGTTCATGTCGAAGGAAATACTTAAAGAGCACATGCACTCTCACGAGGAAGTGAGACGTACTCTGTCGTTGAAAAAAACTGAGAAGGTGGAAAAACGACAGAGTCCAACAAAAGCCGGAATCGCGGGAATATCTTCGTCGCCTTCGGTGCCTACGTCATCCGGTAAAAAACCCAATAAATGTCCGTACTGCGGTAAAGAGTATTTGTACGTAATATCGTTCAACAAGCATCTCAAACAGCACGAAAGAAACAAAGATTCATCGAGAGACGCCACGGAAAATTCATTCGCGGAATCGTTTAACGGCGATGACGATTCGTCAGATTTTGTGAGCTACGAGAATGCGAGAACTTCCGAGGCGAAGAGTCGAGTCGAGCGGGCGAAGGAGGACGATGATGAGGGCGAAGATACGCgtgcagggagaaagaaaagCAGGCGATCGGCACGTTCGGACGTTTCGTACTCGTGTGACAAGTGCCCAATAAAATTCACGTTGAAAAAAGCCCTCGTTGAACACAGCGCCGAACACAATACGGTTTTAAAGTGTAGCACCTGCGAGCAGGAATTTGATGAGCTCGAAAAACTCCGGCGGCATCGATCCGAACACGTTGTTGAGGGAGTTCTGTCGGAACAGGATCTTGAGGACAACGTTTATGAGCAAGGGTTTGACGCCGAAGCCCCGGATGATGGAATGGTGGACATTTATCGAGTCGAAGACGAACAGGAAATGCATCTGGGAGGTACGAGTCACGTACAAAATGACTCGCAACTAGAAGACAACAACGACAGCGAATGGCGGCTCGAAGTTCAGTCAGAAGACTATGAAATTTCTGGTGGCAAGGAAAGGGCCCATGAGATCGAAGGTAATCGGTCCGAGAGCAAGGATCTCAAATGTCCGAATTGTCCCATGAGTTATTCACAGAAAAAATCATTAGCGCGACACATGGAAAGCCACGAGGGAACTACTTACGCTTGTAAGATTTGCAAACAAAAATTCACGAGAAAAGATCATCTTCAACGTCACGTGGAGCAGCACGGAAAAAGTAAATCCTTCAAGTGCACCGAGTGCAACAAAATTTTCGGCAACGAATTGACCCTCAGAAATCATCTTATAGCGACTAATCACAAAACTTTGATACACGGCGAGGCTTATGATCCGAATAAACGGTTAAAACGGGTAGCCGCCAAAGCAGCGCAGAAAATAATCGATAAGATTAAAACGGAGGATGGTATCGAGGAATACGGAGAGGAAAAAGAGGAGCCTAAAGAAGCTAGAAACTCCAAGGGAAATATACGGTGGCCGCGAATCGACGATAAAGTACATCCTACTGCGTCGGCACGAAAAGCCCAACATCGCAATCGACGGAAATCCGATTTTGAGTGTGAAACCTGCGGGAGAAAGTGCAGCTCCAAGCAGTCGTTGACAAAGCATATGGAACAGTATCACGTAAAGGAGGAAAAATTAGAGACTCAAGTGAAGATCGAGAAGGGAAAGAAGAATAGCCCCCTCGACGGAGGCGATAGATCCGCTTGTGGAACGCTAAAACTTGGCGGCTCTCAGGAGGAAAGAACAGAGAACGATGATGAGGAGGATGACGATAACAATTCGGACTTTGAGAGCGGACTCGACTGGCCGATGGACAATCACGAGTGTCCCACGTGCAAGAAGAAATACAGCACAAAAAAATCACTGCTTCGTCATCAGCTGCTTCATGAGGAGCCGAACTTTGAGTGCGACATATGCAATGTGAAATTTTATCGAAAGGACAAGCTCAAATCGCATTACGACAAATGCTCGGAGAAAAACCCCGATCAGGTTAGGAAATGCAATATCTGCGGGGACAGCTTTGAGAACAATGAGATGCTCAAGGAGCACAGAGGAAAACATGTGGATGAGGGCATTTTGACGGAAGAGGATCTCAGGGAAATCGAACCTGATGAGAGCAAAGGCGATGGCAAAGTTGTGCGGAAAAGACGGACTGACATCGTCGGTCTTGAATGCACTGAGTGCAACAAACGATACACTTCTCGCAAGGGTCTCCTTCGACATATACAGGTGCACGAGGGTAAAAAGTATCTATGCGATATCTGTCCGAAAAAGTTTTACCGACGCGAACACCTAAAAATCCACGTCGCCAAGCACAACATGATAAAACCTTACAAATGTTCTCGATGCACGAAGCGTTTCATAAAAGAGGAGCAGTTGGCGAATCATCTATCGAAGCACGATCGTACCTTCAAGAAGAATAAGGAGACCGATAGCTCGAAAAGATTCCTGTGTGAAATATGCTCAAAGAGCTTTACGCAGTCGACAACACTGATAGCTCATCTCCGGGCTCACAATGGAATAAAACCTTATGTTTGCGAGGTGTGCGCTCGTCCCTTTACCACAAACGCCTATCTCAAAATGCACATGAGAACTCACACGCAGGAAAGACCCTACAGTTGCCAATATTGTCAGCGGGCATTCGCTCGCGCAGACACACTAGCTAATCATCTGACTTCGCACACCGGTGAAGCTAAATATCACTGCAAGTACTGTCCGAAAAACTTTAGACGACTAAAGAGTCTCAAAGAGCACGTATTCATCCACACCGGGCAACGTCCGTATTCATGTCCGACTTGCGATCGTCGCTTTAACAACAACGGCAGTCGGTACGCTCACAGCAAGCGTTGCAAACAGAATCTccttcaaaatcaaaatcggCCACAAACCATGCAGCATCCGATAGTACAGAACCCTCAGCAGTCCATTAGAATACACCAGATAACAGGGGAACACGGGACGCCAATGCAGGTCGTTAAATCGCAGAATATCAAGACGATTACGATCGCCAGGCCCGGCGATCAGGTAACCGCACATCAGGTGATGCAGCATCAGGAAATACTCATGCCACTTATTCTGCCTCTAACAGTAACGCTCACCGACGTCGACGAGGAAGTTATTCTACCGGAAGGCACCAAGATATTTACCACTGCTTAA
- Protein Sequence
- MDAVEIDTADGAQNEDAIEATVPEVCRVCLLANSIMRDLFVENEVVSLSTKAMNFASVKMMPGDGLPGQVCCDCADKLDSAYEFKLQVEQADNVLRQRYYSLNIKEELFFNEVEVHLEGEREDDVHTLEVDAHYQATVDSLTAGDAEDAKPGLLKDHLALLQVQKLAEQECAVPVDEKHTVEIVEESTVASILESSEEHGQYLHVNGGNNDDLGDCEVYRNPVKAEGLHDIEGIPIDEHNYIMQQGYTLTRAEEELETQESVDSGAHESAEYLSLIDEEMNAKDDTNPKTLEPTKSEDQQQGENIEQQPKDENVDNSPSEMRRSKRKLMKRSRNTDEESYFENLNLSSRLKKTHDKMEKVYFLCYLCDKQFMSKEILKEHMHSHEEVRRTLSLKKTEKVEKRQSPTKAGIAGISSSPSVPTSSGKKPNKCPYCGKEYLYVISFNKHLKQHERNKDSSRDATENSFAESFNGDDDSSDFVSYENARTSEAKSRVERAKEDDDEGEDTRAGRKKSRRSARSDVSYSCDKCPIKFTLKKALVEHSAEHNTVLKCSTCEQEFDELEKLRRHRSEHVVEGVLSEQDLEDNVYEQGFDAEAPDDGMVDIYRVEDEQEMHLGGTSHVQNDSQLEDNNDSEWRLEVQSEDYEISGGKERAHEIEGNRSESKDLKCPNCPMSYSQKKSLARHMESHEGTTYACKICKQKFTRKDHLQRHVEQHGKSKSFKCTECNKIFGNELTLRNHLIATNHKTLIHGEAYDPNKRLKRVAAKAAQKIIDKIKTEDGIEEYGEEKEEPKEARNSKGNIRWPRIDDKVHPTASARKAQHRNRRKSDFECETCGRKCSSKQSLTKHMEQYHVKEEKLETQVKIEKGKKNSPLDGGDRSACGTLKLGGSQEERTENDDEEDDDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRGKHVDEGILTEEDLREIEPDESKGDGKVVRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCSRCTKRFIKEEQLANHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCQRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYSCPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRPQTMQHPIVQNPQQSIRIHQITGEHGTPMQVVKSQNIKTITIARPGDQVTAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414493;
- 90% Identity
- iTF_00343335;
- 80% Identity
- -