Cinc019611.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- -
- Assembly
- GCA_947507545.1
- Location
- OX382173.1:7908667-7915185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.017 1.8 9.5 2.0 1 23 365 387 365 387 0.95 2 19 0.026 2.8 8.9 0.6 2 23 432 453 431 453 0.95 3 19 0.016 1.7 9.6 0.3 1 21 525 545 525 547 0.90 4 19 0.0044 0.47 11.3 1.2 1 23 551 573 551 573 0.97 5 19 4.8e-06 0.00051 20.7 0.5 2 23 667 688 666 688 0.97 6 19 7.9e-06 0.00084 20.0 3.4 1 23 693 715 693 715 0.96 7 19 0.001 0.11 13.4 0.4 1 21 721 741 721 745 0.92 8 19 6.6e-05 0.007 17.1 3.7 1 23 828 851 828 851 0.95 9 19 5e-05 0.0053 17.5 3.9 1 23 914 936 914 936 0.97 10 19 0.00054 0.057 14.2 1.1 1 20 941 960 941 962 0.94 11 19 0.0017 0.18 12.7 0.5 2 23 973 994 973 994 0.96 12 19 1.3e-05 0.0014 19.3 0.7 2 23 1031 1052 1030 1052 0.97 13 19 2.6e-05 0.0028 18.4 1.6 1 23 1057 1079 1057 1079 0.95 14 19 0.0002 0.022 15.6 1.8 1 23 1085 1107 1085 1107 0.98 15 19 4.6e-06 0.00049 20.7 0.4 1 23 1123 1145 1123 1145 0.95 16 19 1.5e-06 0.00016 22.3 0.3 1 23 1151 1173 1151 1173 0.99 17 19 1.9e-05 0.002 18.8 0.3 1 23 1179 1201 1179 1201 0.98 18 19 0.00015 0.016 16.0 4.1 1 23 1207 1229 1207 1229 0.96 19 19 0.0064 0.68 10.8 0.7 1 20 1235 1254 1235 1256 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGATAGATACGGCGGACGGAGCTCAAAACGAAGATGCCATAGAGGCGACAGTGCCGGAAGTCTGTCGCGTTTGTCTGCTGGGCAATTTGATGATGAGGGACCTTTTTGTGGAGAACGAGGTCGTCTCCTTGTCGACAAAGGCCATGAACTTCGCCAGTGTCAAGATGATGCCAGGCGACGGGCTTCCTGGACAAGTCTGTTGCGACTGCGCTGACAAATTGGATTCGGCGTACGAGTTTAAACTTCAGGTCGAACAGGCGGACAATGTACTCCGACAGCGGTACGATTCGCTCAATATCAAAGAAGAACTCTTCTTCAACGAGGTTGAAGTGCATCTGGAGGGCGAACGAGCCGAGGACGTACATACTCTGGAGGTCGACGCGCATTATCAAGCTACCGTCGATAGCTTGAACACTGCTGAAGCCGAGGACGAGAAACCGGGGCTTCTCAAGGATCATTTAGCTCTGCTTCAGGTTCAGAAACTCGCAGAGCAACAATGCGCTGCATCTGCGGAACAAAAACACAATGTCGAAATTGTCGAGGAATCAACCGTCGCCGGTATTCTCGAATCCACCGAAGAGCACGGCCAATATTTGCACGAAACCGAGGGCAACAATGAAGATCTGGCCGATTGCGAGGTTTACAGAAACTCGGTAAAAACGGAGGGCCTGCACGACATCGAAGGGATTCCAATCGACGAGCACAACTACATAATGCAGCAAGGATACACGTTAACGAGGCCTGAAGAGGAACTGGATTCTCAAGAGAGCGTAGATTCGGGTGCTCACGAGTCCGCCGAGTACTTGTCCTTGATCGACGAAGAGATGAACCCAAAAGACGATACAAATCCCGCGAAAACTTTGGAATCCATGAAAGTTGAAGACCAACAACAGGAAACCCCTGAAACCCTTGAACAACAGCCTACAGATGAAAATCTTGATAATTCGCCGAGCGAAACGCGCCGAAGCAAACGCAAACTGATGAAACGCTCTCGAAACACGGACGAAGAAAGTTACTTCGAGAATCTGAATCTCAGCAGCAGATTGAAAAAGACGCAGGATAAAACGGAAAAAGTTTATTTCCTCTGTTATCTCTGCGACAAACAGTTCATATCGAAGGAGATACTTAAAGAGCACATGCACTCTCACGAAGAAGTGCGACGTACGTTGTCGTTGAAAAAAACGGAGAAGGTGGAAAAGCGACAGAGTCCAGCAAAAGCCGCACTTCCCGGAGTATCTTCGTCGCCTTCAGTGCCTACATCGTCCGGTAAAAAGCCCAACAAATGTCCGTACTGCGGCAAAGAGTATTTGTATGTAATATCGTTCAACAAGCATCTCAAACAGCATGAAAGAAACAAAGACTCTTCGAAAGACGCAGCCTCAATTTCGTTGGCGGAATCGTTTCATGGCGACGACGATTCGTCGGATTTTGCGAGCTACGAGGACGTGAGAACTTCCGAGGCGAACAGTCGAGTGGAGCGAGCGAACGAGGACGAGGAGAGCGAGGATGCAAGCCCAGGGAGAAAAAAGCGAAGGCGATCCGCACGTTCGGACGTGTCCTACTCGTGTGACAAGTGTCCACTAAAATTCATGACGAAAAGAGCCCTCGTTGAACACAGTGTCGAACACAACACGATCTTCAAGTGCAGCACTTGCGAGCAGGAATTTGACGAGCTCGAAAAACTACGGCGACATCGATCGGAACACGTTGTTGAGGGAGTTTTGTCGGAACAGGATCTCGAGGACAACGTTTACGAGCGAGAGTTTGACGCCGAAGCCCCGGATGACGGGATGGAGATTTACGGAGCCGAGGAGGAACAGGAAATGCAATTGGATGCTACGAGCCACGTGGAAAACGACTCGCAACACGCGGACGACAACGAAAACGAATGGCGACTTGAAGTTCAGCCAGAGGATTATGAGCTTCCTGAGTGCAAGGAAAAGATCGAGGAACCCGAAGATAATTGGTCGGAAACCAAGGATCTCAAATGTCCGAATTGTCCCATGACTTATTCGCAGAAAAAGTCATTGGCGCGACACATGGAAAGCCACGAGGGCACTACTTACGCTTGTAAAATTTGCAAACAGAAATTCACGAGAAAAGATCATCTTCAGCGGCACGTTGAGCAGCACGGAAAAACGAAATCCTTCAAGTGCACCGAGTGCAACAAAATTTTCGGCAACGAATTAACGCTGCGAAATCATCTTATAGCGACTAATCACAAGACTGTCGTGCACGGCGAGGCTTACGATCCCAACAAACGGTTGAAACGTGTAGCCGCTAAAGCAGCGCAGAAAATAATCGATAAGATCAAGACGGAGGATGGTATCGAGGAGTTCGGAGAGGAAGAGGACACCAAGGAAGCTAGCAACTCGAAGGGAAACGTTCGGTGGACGCGAAACGACGAAAAAGTTCATCCCACTGCATCGGCGCGAAAAGCCCAGCATCGCAATCGGCGGAGATCCGATTTCGAATGCGAAACCTGCGGGAGAAAGTGCAGCTCCAAACAGTCATTGACAAAACACATGGAACAGTATCACGTCAAGGAGGAAAAGTTGGAGACGCAAGTGAAGATCGAAAAAGGAAAGAAAAGCGAGGGAGGCGATAGATCGGCTTGTGGAACGCAAAAATTGGGCGGAAATCAGGAGGAAAGAACAGAGGACGAAGAGGAGGATGACGATAACAACTCGGACTTTGAGAGCGGACTCGACTGGCCCATGGACAATCACGAGTGTCCTACTTGCAAAAAGAAATACAGCACCAAAAAATCACTGCTTCGTCATCAGCTGCTTCACGAGGAGCCCAACTTCGAGTGCGACATATGCAATGTGAAATTCTATCGAAAGGACAAGCTCAAGTCGCATTACGACAAATGCTCGGAGAAAAACCCCGATCAGGTCAGGAAATGCAATATCTGCGGCGACAGCTTTGAGAATAACGAGATGCTGAAGGAACACAGAGGAAAACATGTGGATGAGGGCATTTTGACGGAAGAAGATCTCAGGGAAATCGAACCTGACGAGAGGAAAGGCGACGGGAAAGTTGTGCGGAAAAGACGAACCGACATCGTCGGACTTGAATGCACCGAATGCAACAAACGGTACACCTCACGCAAAGGCCTCCTCCGTCATATACAGGTGCACGAAGGCAAAAAGTATCTATGCGATATCTGTCCGAAAAAGTTTTACCGGCGTGAGCATCTGAAAATCCACGTTGCCAAGCATAACATGATAAAGCCGTACAAGTGTTCCCGATGCACCAAGCGTTTCATAAAAGAGGAGCAGTTGGCGAATCACTTGTCGAAGCACGATCGCACCTTCAAGAAGACTAAGGAGACTGATAGCTCGAAGAGATTCCTGTGCGAAATATGCTCGAAGAGCTTCACGCAGTCGACGACACTGATTGCTCATCTCCGAGCTCACAATGGAATAAAACCTTACGTTTGCGAGGTCTGCGCTCGTCCCTTTACCACAAACGCCTATCTCAAGATGCACATGAGGACTCACACACAGGAACGACCTTACAGTTGCCAATATTGCCAGCGGGCATTCGCCCGAGCGGACACACTAGCTAATCATCTGACTTCGCACACCGGCGAAGCTAAATACCACTGCAAATACTGTCCGAAAAACTTCAGACGACTAAAGTCCCTCAAGGAGCACGTATTTATCCACACCGGTCAACGTCCGTATTCCTGTCCGACATGCGATCGCCGCTTTAACAACAACGGCAGTCGCTACGCTCACAGCAAGCGTTGCAAGCAGAATCTCCTCCAAAATCAAAACCGGCCGCAACCGATGCAGCAGGCGGTAGTGCAGAATCCTCAGCAGTCCATAAGAATACACCAGTTAACCGGCGAACACGGGGCGCCGATGCAGGTTGTAAAATCGCAGAATATCAAGACGATAACGATCGCCAGGCCTGGCGATCAGGTGACCGCACATCAGGTGATGCAGCATCAGGAAATACTCATGCCACTAATTCTGCCCCTCACAGTAACGCTCACCGATGTCGACGAGGAAGTTATTTTACCGGAAGGCACCAAGATATTTACGACTGCTTAA
- Protein Sequence
- MDAVEIDTADGAQNEDAIEATVPEVCRVCLLGNLMMRDLFVENEVVSLSTKAMNFASVKMMPGDGLPGQVCCDCADKLDSAYEFKLQVEQADNVLRQRYDSLNIKEELFFNEVEVHLEGERAEDVHTLEVDAHYQATVDSLNTAEAEDEKPGLLKDHLALLQVQKLAEQQCAASAEQKHNVEIVEESTVAGILESTEEHGQYLHETEGNNEDLADCEVYRNSVKTEGLHDIEGIPIDEHNYIMQQGYTLTRPEEELDSQESVDSGAHESAEYLSLIDEEMNPKDDTNPAKTLESMKVEDQQQETPETLEQQPTDENLDNSPSETRRSKRKLMKRSRNTDEESYFENLNLSSRLKKTQDKTEKVYFLCYLCDKQFISKEILKEHMHSHEEVRRTLSLKKTEKVEKRQSPAKAALPGVSSSPSVPTSSGKKPNKCPYCGKEYLYVISFNKHLKQHERNKDSSKDAASISLAESFHGDDDSSDFASYEDVRTSEANSRVERANEDEESEDASPGRKKRRRSARSDVSYSCDKCPLKFMTKRALVEHSVEHNTIFKCSTCEQEFDELEKLRRHRSEHVVEGVLSEQDLEDNVYEREFDAEAPDDGMEIYGAEEEQEMQLDATSHVENDSQHADDNENEWRLEVQPEDYELPECKEKIEEPEDNWSETKDLKCPNCPMTYSQKKSLARHMESHEGTTYACKICKQKFTRKDHLQRHVEQHGKTKSFKCTECNKIFGNELTLRNHLIATNHKTVVHGEAYDPNKRLKRVAAKAAQKIIDKIKTEDGIEEFGEEEDTKEASNSKGNVRWTRNDEKVHPTASARKAQHRNRRRSDFECETCGRKCSSKQSLTKHMEQYHVKEEKLETQVKIEKGKKSEGGDRSACGTQKLGGNQEERTEDEEEDDDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRGKHVDEGILTEEDLREIEPDERKGDGKVVRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCSRCTKRFIKEEQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCQRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYSCPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRPQPMQQAVVQNPQQSIRIHQLTGEHGAPMQVVKSQNIKTITIARPGDQVTAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414493;
- 90% Identity
- iTF_01497639; iTF_00653021;
- 80% Identity
- -