Cfag032067.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:2201272-2202867[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0032 40 5.5 0.0 26 48 80 102 77 108 0.90 2 8 0.1 1.3e+03 0.7 0.1 25 48 109 132 101 138 0.82 3 8 0.012 1.4e+02 3.7 0.3 21 48 164 191 158 195 0.88 4 8 0.36 4.5e+03 -1.1 0.0 25 48 198 221 193 223 0.82 5 8 0.00063 7.8 7.7 0.1 22 44 254 276 242 285 0.88 6 8 1.8e-05 0.23 12.6 0.1 16 49 316 349 314 353 0.87 7 8 1.1e-05 0.14 13.3 0.4 22 48 350 376 348 380 0.90 8 8 0.015 1.9e+02 3.3 0.3 24 48 382 406 377 411 0.86
Sequence Information
- Coding Sequence
- ATGGATCAAGAAATAGAACAGATCTTTATAAAACCAGATATTGCACATTTGAAAGTTGAAGTTGATTGCGAACAGGAAAGCAGTGGAAACCCGTACCAGCCTCCGGAACATGTGTTCAACATCAAGAGTGAAGACAGAAGTATTTTACCTTACATAGACTCAACCAATGAAAATGATAAAACAAACTCAGTAGAGATAGTTGGTAAAGTATACGAGAACGGAAAAATAAACCGATTGCAATGTCCACAATGTGATAATACTTTCAAAAACAGAGCCAACTTGAAGCAGCATCTCAAGTTTGTGCATTCGTCCGAAGATGATATTGTTGAATGTGAGAAATGTTACCGGACTTTCAAGTCTGTCGGTCATTTACGCTCACACATTCACTCTGTTCACGCTGAAGAAAAAGAAGTGAGCTGCGAACATTGCGGTAAAGTGTTCTCAAACAAAAAACGACTTAACAATCATATTTTCTATTCCCACCCGGAACCGGAAGAAAGCGTCAATTGCAGTGTATGCTCCAAATCTTTCAAGCGTAGATACAATTTGAAAATACATATGAGACTTGTCCATCCTTCCGACGACAGATCGGTACAATGCCCACATTGCGATAAGAAATTTAAAGTAGATATGTTACTACAGAGACATATAAAATGGAGTCACCCTCAAGACGGAATGATGTACCGCTGCCCCGAATGCGGGAGAACATTGCCATCTATCGCTTGCTTTAGAAAACACATGCAGAACGTACATTCAGGCTCCCAAGATGCTGTTTGCAAAATCTGCTCCAAAGTTTTCAAAACAGTCAAAACTTTAAACAGACATGAGAGAAACATTCACGGAGGAGCGAAAGCTGAAGCCAAACCGTGCAAAGTAGGAGATATACCATGTTCACAGTGCGACAAAAAATTCACGACAAATACAGCATTATTTTGGCATTTCGAGAGACATCATTCCGAGAATAAAAGAAGTAATACTTGTCAGATATGTAACAAAGAGTTATCCGATCAAGGGAGTTTGAAGAGACATTTAGAAATGGTGCATTCCTTTGATCCTGTCAACTGTCCTATATGCTCAAAAACTTTTAAAAGTCACATGAATCTACAGAGGCATATTAGAGTCACCCATGCTCCACCAGAAGCGGCCCAGAAATGCGACATTTGTAATAAAACTTTCAAATGCTCTATGCATTTAAGGATACATATAAACGCAGTCCACTCCACAGAAGGCATATTCACCTGTGATATTTGCAATAAGGAATTCTCCTCAAAGAAATATATGTTGAAACACAAGAAAACCCATGTAGATGTCAAGCTCTTTCCATGTGGAGTTTGTAGCAAAATGTTTAAATGTGTTAATGAtgttaaaaaacatacaaaacgTGTGCATATGAAGACACCAGTTAAAACAGAAAATGTAGAACCTGAAAGTAAAGAAGCTGAAAGCCTTAAAGATATGGAAGCTAATACAGAAGCACTGACTTGTTCGAAATGTGGTGGTGATTTTGAGAATGAAACAGAGTTACATTCGCATATTGTGAACTGTGGTGAGCTCCCAGCGGTGGCGTTTGTGAAGGCTGAATTGGAAGATTGGTAG
- Protein Sequence
- MDQEIEQIFIKPDIAHLKVEVDCEQESSGNPYQPPEHVFNIKSEDRSILPYIDSTNENDKTNSVEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECEKCYRTFKSVGHLRSHIHSVHAEEKEVSCEHCGKVFSNKKRLNNHIFYSHPEPEESVNCSVCSKSFKRRYNLKIHMRLVHPSDDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAVCKICSKVFKTVKTLNRHERNIHGGAKAEAKPCKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNTCQICNKELSDQGSLKRHLEMVHSFDPVNCPICSKTFKSHMNLQRHIRVTHAPPEAAQKCDICNKTFKCSMHLRIHINAVHSTEGIFTCDICNKEFSSKKYMLKHKKTHVDVKLFPCGVCSKMFKCVNDVKKHTKRVHMKTPVKTENVEPESKEAESLKDMEANTEALTCSKCGGDFENETELHSHIVNCGELPAVAFVKAELEDW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00409524;
- 80% Identity
- iTF_00410545; iTF_00410524;