Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419680.1:1124136-1125707[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.2e-06 0.0005 20.8 1.0 2 23 79 101 78 101 0.94

2 14 0.00061 0.033 15.1 2.8 2 23 109 131 108 131 0.95

3 14 2e-05 0.0011 19.8 2.3 2 23 138 160 137 160 0.92

4 14 3.6e-07 2e-05 25.3 1.2 3 23 169 190 167 190 0.95

5 14 3.9e-05 0.0021 18.9 1.2 2 23 198 220 197 220 0.96

6 14 0.00012 0.0065 17.3 0.8 1 23 227 250 227 250 0.97

7 14 0.0072 0.39 11.7 3.0 2 23 257 279 257 279 0.95

8 14 0.0002 0.011 16.6 1.7 2 23 295 316 294 317 0.93

9 14 7.1e-05 0.0038 18.1 0.3 2 23 325 347 325 347 0.96

10 14 6.3e-07 3.4e-05 24.5 1.8 3 23 354 375 352 375 0.96

11 14 0.0022 0.12 13.4 3.7 2 23 383 405 382 405 0.95

12 14 3.3e-05 0.0018 19.1 2.7 1 23 411 433 411 433 0.99

13 14 0.21 11 7.1 2.3 1 23 439 462 439 462 0.95

14 14 0.057 3.1 8.9 0.2 2 21 486 505 485 506 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.2e-06	0.0005	20.8	1.0	2	23	79	101	78	101	0.94
2	14	0.00061	0.033	15.1	2.8	2	23	109	131	108	131	0.95
3	14	2e-05	0.0011	19.8	2.3	2	23	138	160	137	160	0.92
4	14	3.6e-07	2e-05	25.3	1.2	3	23	169	190	167	190	0.95
5	14	3.9e-05	0.0021	18.9	1.2	2	23	198	220	197	220	0.96
6	14	0.00012	0.0065	17.3	0.8	1	23	227	250	227	250	0.97
7	14	0.0072	0.39	11.7	3.0	2	23	257	279	257	279	0.95
8	14	0.0002	0.011	16.6	1.7	2	23	295	316	294	317	0.93
9	14	7.1e-05	0.0038	18.1	0.3	2	23	325	347	325	347	0.96
10	14	6.3e-07	3.4e-05	24.5	1.8	3	23	354	375	352	375	0.96
11	14	0.0022	0.12	13.4	3.7	2	23	383	405	382	405	0.95
12	14	3.3e-05	0.0018	19.1	2.7	1	23	411	433	411	433	0.99
13	14	0.21	11	7.1	2.3	1	23	439	462	439	462	0.95
14	14	0.057	3.1	8.9	0.2	2	21	486	505	485	506	0.93

Sequence Information

Coding Sequence: ATGGACCAAGAAATAGAACAAATCTTCATAAAGCCAGACATTGCTCATTTGAAAGTGGAAGTTGATTGTGAACAGGAATGCAGTGGAAACCCATATCAGCCTCCGGAACATGTGTTCAACATTAAGAGCGGAGACGGAAGTATTCTACCTTATGTAGACACTACCAATGAAAGTCCTAAAACAAACATAGAGATTGTTGGTAAAGTATATGAGAATGGAAAAATAAACAGATTACAGTGCCCACAATGTGATAATACTTTCAAAAATAGAGCCAACTTGAAGCAACATCTCAAGTTTGTGCATTCGTCAGAAGATGACATTGTGGAATGTGATAAATGTTATAGGACTTTCAAGTCTGTCGGTCATTTACGCTCACACATTCACTCTGTTCACGCTGAAGAAAAAGAAGTCAGCTGTGAACATTGCGGTAAAGTGTTCTCAAACAAGAAACGTCTAAACAATCATATTTTCTATTCCCATCCGGAACCAGAAGAAAGCGTCAATTGCAGTGTCTGCTCTAAATCTTTTAAGCGTAGATACAATTTGAAAATACATATGAGACTTGTCCATCCATCAGAAGACAGATCCGTGCAATGCCCACATTGTGACAAGAAGTTTAAAGTAGATATGTTGCTACAGAGACATATAAAGTGGAGTCACCCGCAAGACGGAATGATGTACCGCTGCCCAGAATGCGGAAGAACATTACCATCTATCGCTTGCTTTAGAAAACACATGCAGAATGTACATTCCGGCTCCCAAGATGCTGTTTGCAAAATCTGCTGTAAAGTTTTCAAAACAGTCAAGACTCTAAACAGACATGAAAGAAATATTCACGGAGGAGCGAAAGTTGAAGCTAAACCGTGCAAAGTAGGAGACATACCATGTTCACAGTGTGACAAAAAATTCACGACAAATACAGCTTTATATTGGCATTTCGAGAGACATCATTCAGAGAATAAAAGAAGTAATACTTGCCAGATTTGTAACAAAGAGTTATCCGATCAAGGGAGCTTGAAAAGACATCTAGAAATGGTGCATTCCTTTGATCCTGTCAACTGTCCTATATGCTCAAAAACTTTTAAAAGTCATATGAATTTACAGAGGCATATTAGAGTCACCCATGCCCCGCCAGAAGCGGCCCAGAAGTGCGACATTTGCAACAAAACTTTCAAATGCTCTATGCATTTACGGATACATATAAACGCCGTACACTCTACAGAAGGCATATTCACCTGTGATATTTGCAATAAAGAATTTGCATCAAAGAAATATATGTTGAAACATAAGAAAACTCATGTAGACGTGAAACTGTTTCCATGTGGAGTTTGTAGCAAGATGTTTAAGTGTGTTAATGATGTTAAAAAGCATACAAAACGGGTGCATATGAAGACACCAGTGAAAACAGAAATTGTAGAAAGCCAAGATGATATAGAAGCTAATACGGAAACACTGAATTGTTCGAAATGTGGTGGTGATTTTGAGAATGAAACAGAGTTACATTCGCATATTATGAACTGTGGCGAGCTCCCAGCGCTTGCGTTTGTGAAGGTTGAATTGCAAGATTTGTAG
Protein Sequence: MDQEIEQIFIKPDIAHLKVEVDCEQECSGNPYQPPEHVFNIKSGDGSILPYVDTTNESPKTNIEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAEEKEVSCEHCGKVFSNKKRLNNHIFYSHPEPEESVNCSVCSKSFKRRYNLKIHMRLVHPSEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAVCKICCKVFKTVKTLNRHERNIHGGAKVEAKPCKVGDIPCSQCDKKFTTNTALYWHFERHHSENKRSNTCQICNKELSDQGSLKRHLEMVHSFDPVNCPICSKTFKSHMNLQRHIRVTHAPPEAAQKCDICNKTFKCSMHLRIHINAVHSTEGIFTCDICNKEFASKKYMLKHKKTHVDVKLFPCGVCSKMFKCVNDVKKHTKRVHMKTPVKTEIVESQDDIEANTETLNCSKCGGDFENETELHSHIMNCGELPALAFVKVELQDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00148678;
90% Identity: iTF_00409938; iTF_00411056; iTF_00410545; iTF_00410524;
80% Identity: iTF_00409938;