Cfag029949.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:1262063-1264834[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.26 17 7.1 0.1 1 23 45 67 45 67 0.94 2 19 2.6 1.6e+02 4.0 0.3 2 23 91 113 90 113 0.93 3 19 0.0049 0.31 12.6 6.6 1 23 135 157 135 157 0.98 4 19 0.0039 0.25 12.9 0.3 3 23 163 183 162 183 0.95 5 19 0.013 0.84 11.2 0.2 1 23 191 214 191 214 0.95 6 19 0.13 8.5 8.1 0.4 1 23 220 243 220 243 0.95 7 19 0.092 5.9 8.6 3.3 1 23 249 272 249 272 0.96 8 19 0.00031 0.02 16.4 0.2 1 23 278 300 278 300 0.96 9 19 4e-05 0.0026 19.2 1.4 1 22 306 327 306 327 0.97 10 19 1.3 85 4.9 2.8 1 23 394 417 394 417 0.94 11 19 4.3 2.7e+02 3.3 0.2 3 23 441 461 440 461 0.95 12 19 0.0085 0.54 11.8 3.1 1 23 483 505 483 505 0.96 13 19 5.6e-05 0.0036 18.7 1.5 1 23 509 531 509 531 0.98 14 19 0.0016 0.1 14.1 0.2 1 23 536 559 536 559 0.95 15 19 0.00096 0.061 14.8 2.7 1 23 565 588 565 588 0.98 16 19 0.016 1 10.9 1.6 1 23 595 618 595 618 0.95 17 19 0.025 1.6 10.3 0.6 1 23 624 646 624 646 0.91 18 19 7.3e-06 0.00047 21.5 0.5 1 23 652 674 652 674 0.99 19 19 6e-06 0.00039 21.7 3.0 1 23 680 702 680 703 0.96
Sequence Information
- Coding Sequence
- ATGCTCATATCAGggtCCACCGACCTCAAACTTAAATGGAAACCGAAACGCAAGTATAACGATCACAGAGACAATGCGGCTATTATAATAGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGGGGGGCGTTCACGTGCGCCTTCTGTCCCATGTCCTTCGGGGACTTCAGCGGCATCCGAGAACATGCGCTTGAGCACCCTAACCGGGTCGAGGCCATGCGATTAGCGCGACCCTTAGACAACGTCAAAGTAGAGATCACTGGCCTCCGCTGCGAACTTTGCTTACTACACGTTAAAGACGTTGAGACATTAAAGGAACACTTACTCCAAATCCATGATAAACCTATTACCATAAATCATGGCATCGGCGTTACTCCTTTCCTTATAGAAGGAAAAGAGttcgtgtgcacacattgtggAGAACACTTTGAGCTGTTTTCAAAATTAAACACACATATGAATCATCATTATCCGAACAACATATGCTTCCAGTGCGGCAAAGCATTCTCCGCCGCGCATAGACTTAAAGCTCATTTAGTTATACATGAGGCCTCAAACAGTATGCAGTACAAATGTTCCAAATGCGACGACGTTTTCGCGACTCGTGCTTTGAAGAATAGCCACATGGCTTTGGCACACGGCCCGGAATATCGGTATCGCTGTCCATATTGTAATGACTCTTTCTTAAGATACGCCGATAGGGCAAAGCATCTCAAGGTTGCTCATGATAGGAAAGTTGAGTATCCTTGCCATCTATGCACAGCCGTCTTCTCCATGTGCAATCAGAGAACTAAGCATATACAACAAGTACACATTAGACATAAGCAGTTCTTCTGTGCCTTATGCCCGTATCAGTTCGTCACGGCAGCCCAGCTTAGGAATCACATGGTCAAACATGTAGGGGAGAGAAAATACCAATGTCAGGTCTGTAAGAAGTCCTATGCTAGAACCAAAACGTTGAAGGAACACATGCGACGGAAAGGTGAAGACGTTCAGTACAAACCAGAATCCGCTGTTGAGGTCAAACAAGAATTGGCCGAGGCAGAGGATATTGACGCTGCGTCCGCAGCTGTCAAACGGGAGGAGGGCGAACGGAGACGAACCAACTTTAGAAATAACATCTCCACTATCATAGACACGACCACCGCATACCCCTTCAAATATAGAAGGGGAATGTACCTCTGTTACTACTGCAAACACACATTCCTAGAGCCAGAGAAGCTACGCCAACACAACCGTATCTATCATTCCGAATCGAAAGTACTCCCGAAACCCAGAAAATATGAACCCGTTAAAATGGATTTCTCAACCGCTTTGTGCAAGCTGTGTCTAACTGAAATTCGCGACTATGCCATGTTGAAATCACATCTGATCGAACACGGCAAAGAGATAGATAATACTTTTGGAGACAGCGTGCTTCCGTACAAGTTAAGCAAGGACGAGCATGTCTGTCAAGTATGTGGAAAGACATACGAGATGTTCCTAAGCTTACATAAACACATGAACGACCATTACGAACATTATATTTGTGAGAAATGTGGGAAAAGGTTCGCGACATCACAACGCATGCTCAATCACACTCGCACTCACGAAACCGGCGTGTTTCCGTGCAAGCAGTGCGATGAGACCTTCACTTCGTACGCTCCCTTATACACCCACGTTGCTAAAGTCCATAGATTTAACAAGAGATATAAATGTCCTATCTGTAACGAAAAATTCGTGTCTTACAAACAGAGACTGAAGCATTTACACACTGTGCATGAGCAGAAAACGCCCGTTTTCCCTTGTCCCTCTTGCGACAGAGTTTTCGATTTATGCAGTAAGAGAACTGCACATATTAGGTTCCAGCATTTGCAGGAGAGGAATCATGTGTGCATTGTCTGCGGGATGAAGTTTTTCAGTAATTATGAGCTTCAGGAACATGCGATCAAGCATGGCGGGGAGAGGATATACCAGTGCGATGTCTGCAAGAAGGCGTACGCTAGAATAAAGACCCTTAGGGAACATATGCGGATACATAATAACGACAGACGATATACGTGTCCCGTATGTGGACAGAGTTTCATCCAAAATTGTAGCATGAAGCAGCATATTAGGGTGCACCATCCCACGCATTTGAAAgatgtattttaa
- Protein Sequence
- MLISGSTDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGAFTCAFCPMSFGDFSGIREHALEHPNRVEAMRLARPLDNVKVEITGLRCELCLLHVKDVETLKEHLLQIHDKPITINHGIGVTPFLIEGKEFVCTHCGEHFELFSKLNTHMNHHYPNNICFQCGKAFSAAHRLKAHLVIHEASNSMQYKCSKCDDVFATRALKNSHMALAHGPEYRYRCPYCNDSFLRYADRAKHLKVAHDRKVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHVGERKYQCQVCKKSYARTKTLKEHMRRKGEDVQYKPESAVEVKQELAEAEDIDAASAAVKREEGERRRTNFRNNISTIIDTTTAYPFKYRRGMYLCYYCKHTFLEPEKLRQHNRIYHSESKVLPKPRKYEPVKMDFSTALCKLCLTEIRDYAMLKSHLIEHGKEIDNTFGDSVLPYKLSKDEHVCQVCGKTYEMFLSLHKHMNDHYEHYICEKCGKRFATSQRMLNHTRTHETGVFPCKQCDETFTSYAPLYTHVAKVHRFNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCIVCGMKFFSNYELQEHAIKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHLKDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072816; iTF_00871569; iTF_00412736;
- 90% Identity
- iTF_00871569; iTF_00412736;
- 80% Identity
- -