Nudd048528.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:11351010-11354151[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 2.2 10.5 0.1 1 23 8 31 8 31 0.92 2 18 0.46 53 6.2 3.9 1 23 37 60 37 60 0.96 3 18 0.25 29 7.0 0.2 1 23 118 140 118 140 0.93 4 18 0.029 3.3 9.9 6.9 1 23 208 230 208 230 0.95 5 18 0.0036 0.41 12.8 0.3 3 23 236 256 235 256 0.95 6 18 0.00013 0.015 17.3 0.4 1 23 264 287 264 287 0.95 7 18 0.12 14 8.0 0.4 1 23 293 316 293 316 0.95 8 18 0.14 16 7.8 2.5 1 23 322 345 322 345 0.96 9 18 0.00013 0.015 17.3 0.2 1 23 351 373 351 373 0.97 10 18 1.4 1.6e+02 4.6 3.0 1 23 435 458 435 458 0.94 11 18 0.0078 0.9 11.7 3.1 1 23 524 546 524 546 0.96 12 18 5.2e-05 0.006 18.6 1.5 1 23 550 572 550 572 0.98 13 18 0.0047 0.54 12.4 0.1 1 23 577 600 577 600 0.95 14 18 0.00088 0.1 14.7 2.7 1 23 606 629 606 629 0.98 15 18 0.015 1.7 10.9 1.6 1 23 636 659 636 659 0.95 16 18 0.00037 0.043 15.9 0.9 1 23 665 687 665 687 0.96 17 18 6.8e-06 0.00078 21.4 0.5 1 23 693 715 693 715 0.99 18 18 5.6e-06 0.00064 21.6 3.0 1 23 721 743 721 744 0.96
Sequence Information
- Coding Sequence
- ATGTGCCACGAATCTGGGCAGTATTCATGTCTCAAATGCGATGCAGTGTTTCCTAATCGTGTTTCAAGAAACCGACATGTTTCTGCTGCTCATGGGCGAAAGGAAAGATATCGTTGTCCTATTTGCGACGATCATTTCGATTCCTATCATTCTAGATTAAAGCATCTGGATAAAACGCATGGACAAAAAGTAGAATATCGCTGTAGCTTTTGCCCTTCTATATTTGGAAGCGggtCCATCGACCACAAACTTAAATGGAAACCGAAGCGCAAGTATAACGATCACAGAGACAATGCGGCTATTATTATTGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGAGGGACGTTCACTTGTGCCTTCTGTCCCATGTCTTTCGGGGACTTCAGCGGCGTCAGAGACCACTCGCTCGAGCACCCTAACAGGGTCGAGGCGATGCGGCTAGCACGCCCCTTAGACAACGTCAAAATAGAGATCAGCGGGCTCCGCTGCGAGCTCTGTCTAGAACTCATCAAAGACGTTGAAACACTAAAGGAACACTTGCTTCTAATCCACGATAAACCTATTAGCAAGGGCCATAGCATCGGTGTCACACCCTTTCTAATAGAAGGAAAGGATTTTTTGTGCACTCACTGTGGAGAACACTTTGAGCTGTTTTCGAAATTAAATACACATATGAATCATCATTATCCAAATAACATATGCTTCCAATGCGGCAAAGCGTTCTCTGCCGCACACAGACTAAAAGCTCACTTAGTTATACATGAAGCTTCCAATAGTCTTCAGTATAAATGTTCTAAATGCGACGAAGTTTTCACGACGCGCGCTTTAAAGAACAGTCACATGGCTTTAGCACACGGTCCTGAGTACCGCTATCGATGTCCATATTGTAACGACTCGTTCTTGCGATACGCAGATAGAGCTAAACATCTCAAAGTTGCACACGATAGGAAAATAGAGTATCCTTGTCATCTATGCACAGCCGTGTTCGCTATGTGTAATCAGAGAACTAAGCATATACAACAAGTACATATAAGACATAAGCAGTTTTCCTGTGCGTTGTGCCCTTATCAGTTCGTAACCGCTGCGCAACTTAGGAATCATATGGTGAAACACATAGGCGAGAGAAAATATCAATGTCAGGTCAAACAAGTGTTGGCCGAGGCAGAGGATATTAACGCTGCATCCGCAGCCATCAAACGAGAGGAGGGCGAACGGAGACGAACCAACTTTCGGAATAATATCTCTACTATCATAGACTCGACCACAGTATacccattcaaatatagaaGAGGGGTATACCTCTGTTATTACTGCAAACACACATTCCTAGAACCCGAAAAACTACGGCAGCACAACCGTATCTTCCATTCAGAATCAAAAGTATTGCCGAAACCCAGAAAGTACGAACCGATTAAAATGGATTTCTCAACTGCTTtatgcaagctttgcttagcggAAATATGCGACTATGCCATGATGAAAACACATTTGATTGAACACGGCAAAGAACTAGACAACACTTTTGGGGACAGCGTACTTCCTTACAAGTTGAGCAGGGACGAGCACGTATGTCAAGTTTGTGGGAAAACTTACGAGATGTTTTTAAGCTTGCATAAACATATGAACGACCATTTTGAGCATTATATTTGCGAGAAATGTGGGAAAAGATTCGCGACATCCCAACGTATGTTAAACCACACTCGCACACACGAACGCGGCGTGTTTCCGTGCAAGCAATGCGACCAGACATTCCCATCCTACGCGCCTTTATACACTCACGTTGCAAAAGTACATAGATTTAATAAGAGATATAAATGCCCCATTTGTAACGAAAAATTTGTGTCTTACAAACAGCGACTAAAGCATCTGCATACAGTCCACGAGCAGAAAACTCCCGTTTTCCCTTGCCCATCGTGTGACCGAGTTTTTGATCTGTGCAGTAAAAGAACAGCCCATATCAGATTTCAACATTTGCAGGAACGAAATCATGTGTGCAGCGTATGTGGAATGAAGTTCTTTAGTAATTATGAGCTTCAGGAGCATGCAATCAAGCATGGAGGCGAAAGAATATACCAATGCGATGTGTGCAAGAAGGCGTACGCTAGAATAAAGACCCTCAGAGAACACATGCGGATCCATAACAACGACAGGCGGTATACTTGTCCTGTGTGCGGACAAAGTTTTATTCAGAACTGTAGCATGAAACAGCATATTAGGGTGCATCATCCCACGCATTTGAAAGATGTATTTTAA
- Protein Sequence
- MCHESGQYSCLKCDAVFPNRVSRNRHVSAAHGRKERYRCPICDDHFDSYHSRLKHLDKTHGQKVEYRCSFCPSIFGSGSIDHKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGTFTCAFCPMSFGDFSGVRDHSLEHPNRVEAMRLARPLDNVKIEISGLRCELCLELIKDVETLKEHLLLIHDKPISKGHSIGVTPFLIEGKDFLCTHCGEHFELFSKLNTHMNHHYPNNICFQCGKAFSAAHRLKAHLVIHEASNSLQYKCSKCDEVFTTRALKNSHMALAHGPEYRYRCPYCNDSFLRYADRAKHLKVAHDRKIEYPCHLCTAVFAMCNQRTKHIQQVHIRHKQFSCALCPYQFVTAAQLRNHMVKHIGERKYQCQVKQVLAEAEDINAASAAIKREEGERRRTNFRNNISTIIDSTTVYPFKYRRGVYLCYYCKHTFLEPEKLRQHNRIFHSESKVLPKPRKYEPIKMDFSTALCKLCLAEICDYAMMKTHLIEHGKELDNTFGDSVLPYKLSRDEHVCQVCGKTYEMFLSLHKHMNDHFEHYICEKCGKRFATSQRMLNHTRTHERGVFPCKQCDQTFPSYAPLYTHVAKVHRFNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHAIKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHLKDVF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410563;
- 90% Identity
- -
- 80% Identity
- -