Lstr037457.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- Zfp646_1
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:1268813-1273388[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.17 15 7.6 0.1 1 23 92 114 92 114 0.94 2 19 7 6.1e+02 2.5 0.3 2 23 138 160 137 160 0.92 3 19 0.16 14 7.6 6.5 1 23 182 204 182 204 0.98 4 19 0.01 0.88 11.4 0.2 3 23 210 230 209 230 0.95 5 19 0.0004 0.035 15.8 0.4 1 23 238 261 238 261 0.95 6 19 0.26 23 7.0 0.5 1 23 267 290 267 290 0.93 7 19 0.092 8 8.4 3.3 1 23 296 319 296 319 0.96 8 19 0.00031 0.027 16.2 0.2 1 23 325 347 325 347 0.96 9 19 3.9e-06 0.00034 22.2 1.9 1 23 353 375 353 375 0.99 10 19 3.5 3.1e+02 3.4 1.6 1 18 381 398 381 398 0.94 11 19 1.3 1.2e+02 4.8 2.8 1 23 466 489 466 489 0.94 12 19 0.0084 0.74 11.7 3.1 1 23 555 577 555 577 0.96 13 19 6.7e-05 0.0058 18.3 1.6 1 23 581 603 581 603 0.98 14 19 0.0011 0.096 14.5 0.2 1 23 608 631 608 631 0.95 15 19 0.00095 0.083 14.6 2.7 1 23 637 660 637 660 0.98 16 19 0.016 1.4 10.8 1.6 1 23 667 690 667 690 0.95 17 19 0.0004 0.035 15.8 0.9 1 23 696 718 696 718 0.96 18 19 7.3e-06 0.00064 21.3 0.5 1 23 724 746 724 746 0.99 19 19 6e-06 0.00053 21.6 3.0 1 23 752 774 752 775 0.96
Sequence Information
- Coding Sequence
- ATGCGCCGACGCCGCCGCGCCAACAACGAATTGCCGGAGGAATCCGAGAAACGAATCTCCAAAACTATGATGCGCAGGAACGCTATGACCCTCCTTGAATGTTCCACAGCTTGGGCTTTCCGGTGGTTCCACAGCGCGTTTTACTGCTCCTATTggtcCACCGACCTCAAACTTAAATGGAAACCGAAACGCAAGTATAACGATCACAGAGACAATGCGGCTATTATAATAGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGGGGGACGTTCACTTGCGCCTTCTGCCCCATGTCCTTCGGGGACTTCAGCGGCGTCAGAGATCACGCGCTCGAGCACCCTAACCGGGTCGAGGCGATGCGATTAGCGCGGCCCTTAGACAACGTCAAAGTAGAGATCACTAGCCTCCGCTGCGAACTTTGCTTATTACACATTAAAGACGTTGAAACATTAAAGGAACACTTACTCCAAATTCATGGCAAACCTATTAGCGAAAATCATGGCATCGGCGTTACTCCTTTCCTAATAGAAGGAAAGGAGTTTGTGTGCACACATTGTGCAGAACACTTCGAACtgttttcaaaattaaacacACATATGAATCATCATTATCCAAATAACATTTGCTTCCAATGTGGGAAAGCGTTCGCCGCCGCGCATAGACTTAAAGCCCATTTAGTTATACACGAGGCCTCAAACAGTATGCAGTATAAATGTTCCAAATGCGACGAAGTTTTCGCAACTCGGGCTTTGAAGAATAGCCACATGGCGTTAACACACGGTCCCGAATACCGCTATCGCTGTCCATATTGTAATGACTCCTTCTTGAGATACGCAGATAGGGCAAAGCATCTCAAGCTTGCACATGATAGGAAAGTTGAGTATCCTTGCCATCTCTGCACCGCCGTTTTCTCCATGTGCAATCAGAGAACCAAGCATATTCAACAAGTACACATTAGACATAAGCAGTTCTTCTGTGCCTTGTGCCCGTATCAGTTCGTCACGGCGGCACAACTTAGGAATCACATGGTCAAACATGTAGGGGAAAGAAAGTACCAATGTCAGGTCTGCAAGAAGTCCTACGCTAGAACCAAAACGCTGAAGGAACATATGCGAATACATAATAATGATAAACGATTCGTTTGCGAGTTCTGTAACAATGCTTACGTGCAAAAGTGTAGCCTCCAGAgaCGGAAAGGTGAAGACGTTCAGATCAAACCAGAATCCGCTGTTGAGGTCAATCAAGAATTGGCCGAGGCAGAGGATAAGGACGCTGCGTCCGCAGCCATCAAACGTGAGGAGGGTGAACGGAGACGATGCAACTTTAGAAATAACATCTCCACTATCATAGACACAACCACCGTCTACCCTTTCAAATATAGAAGAGGAATGTACCTCTGTTACTACTGCAAGCACACATTCCTAGAACCCGAGAAACTAAGGCAGCACAACCGGATCTACCATTCCGAATCCAAAGTACTGCCGAAACCCAGAAAATATGAACCCGTCAAAATGGATTTCTCTACAGCGTTGTGCAAGTTGTGCCTTACTGAAATTCACGACTACGCTATGATGAAGACACATTTGACTGAACACGGGAAAGAGATAGACACCACGTTTGGAGACAGCGTGCTTCCGTACAAGTTAGGCAGAGACGAGCACGTGTGTCAAGTGTGTGGAAAAACGTACGAGATGTTCCTAAGCTTACATAAACATATGAACGATCATTATCAGCATTATATTTGCGAGAAATGTGGGAAAAAATTCGCAACATCGCAACGCATGCTCAATCACACTCGCACTCACGAAACGGGAGTTTTCCCGTGCAAGCAGTGCGATGAGACCTTCTCTACATACGCTCCCCTATACACCCACGTTGCAAAAGTCCATAGATTTAACaaaagatacaaatgtcctatcTGCAACGAGAAATTTGTGTCTTACAAGCAGAGACTGAAGCATTTACACACAGTGCATGAGCAAAAAACTCCCGTGTTCCCTTGTCCGTCTTGCGACCGAGTATTCGATTTGTGCAGTAAAAGAACAGCACATATTAGATTCCAGCACCTGCAGGAGCGGAATCATGTATGCAGCGTGTGCGGGATGAAGTTCTTCAGTAATTATGAGCTTCAAGAGCATGCTATCAAGCATGGCGGAGAAAGGATTTACCAGTGTGATGTCTGCAAGAAAGCCTACGCTAGAATTAAGACGCTTAGGGAACACATGCGGATACATAACAACGACAGACGTTACACTTGTCCTGTGTGTGGACAGAGTTTCATTCAGAATTGTAGCATGAAGCAACATATAAGGGTGCATCATCCTACGCATTTTAAAGATGTATTCTTGTGA
- Protein Sequence
- MRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYWSTDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGTFTCAFCPMSFGDFSGVRDHALEHPNRVEAMRLARPLDNVKVEITSLRCELCLLHIKDVETLKEHLLQIHGKPISENHGIGVTPFLIEGKEFVCTHCAEHFELFSKLNTHMNHHYPNNICFQCGKAFAAAHRLKAHLVIHEASNSMQYKCSKCDEVFATRALKNSHMALTHGPEYRYRCPYCNDSFLRYADRAKHLKLAHDRKVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHVGERKYQCQVCKKSYARTKTLKEHMRIHNNDKRFVCEFCNNAYVQKCSLQRRKGEDVQIKPESAVEVNQELAEAEDKDAASAAIKREEGERRRCNFRNNISTIIDTTTVYPFKYRRGMYLCYYCKHTFLEPEKLRQHNRIYHSESKVLPKPRKYEPVKMDFSTALCKLCLTEIHDYAMMKTHLTEHGKEIDTTFGDSVLPYKLGRDEHVCQVCGKTYEMFLSLHKHMNDHYQHYICEKCGKKFATSQRMLNHTRTHETGVFPCKQCDETFSTYAPLYTHVAKVHRFNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHAIKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHFKDVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410563;
- 90% Identity
- iTF_00410563;
- 80% Identity
- -