Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387699.1:1223259-1226664[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.1 6.2 8.1 0.1 1 23 44 66 44 66 0.95

2 20 5.7 3.5e+02 2.6 0.3 2 23 90 112 89 112 0.92

3 20 0.00066 0.041 14.9 4.4 1 23 134 156 134 156 0.98

4 20 0.0032 0.2 12.8 0.3 3 23 162 182 161 182 0.95

5 20 0.00029 0.018 16.1 0.2 1 23 190 213 190 213 0.95

6 20 0.11 7 7.9 0.4 1 23 219 242 219 242 0.95

7 20 0.075 4.6 8.5 3.3 1 23 248 271 248 271 0.96

8 20 0.00025 0.015 16.3 0.2 1 23 277 299 277 299 0.96

9 20 3.2e-06 0.0002 22.2 1.9 1 23 305 327 305 327 0.99

10 20 0.00051 0.031 15.3 4.8 1 23 333 355 333 356 0.96

11 20 1.1 67 4.8 2.8 1 23 432 455 432 455 0.94

12 20 2.3 1.4e+02 3.8 0.1 3 23 479 499 478 499 0.95

13 20 0.0069 0.43 11.7 3.1 1 23 521 543 521 543 0.96

14 20 4.6e-05 0.0028 18.6 1.5 1 23 547 569 547 569 0.98

15 20 0.0013 0.078 14.0 0.2 1 23 574 597 574 597 0.95

16 20 0.00078 0.048 14.7 2.7 1 23 603 626 603 626 0.98

17 20 0.013 0.81 10.9 1.6 1 23 633 656 633 656 0.95

18 20 0.00033 0.02 15.9 0.9 1 23 662 684 662 684 0.96

19 20 5.9e-06 0.00037 21.4 0.5 1 23 690 712 690 712 0.99

20 20 4.9e-06 0.0003 21.6 3.0 1 23 718 740 718 741 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.1	6.2	8.1	0.1	1	23	44	66	44	66	0.95
2	20	5.7	3.5e+02	2.6	0.3	2	23	90	112	89	112	0.92
3	20	0.00066	0.041	14.9	4.4	1	23	134	156	134	156	0.98
4	20	0.0032	0.2	12.8	0.3	3	23	162	182	161	182	0.95
5	20	0.00029	0.018	16.1	0.2	1	23	190	213	190	213	0.95
6	20	0.11	7	7.9	0.4	1	23	219	242	219	242	0.95
7	20	0.075	4.6	8.5	3.3	1	23	248	271	248	271	0.96
8	20	0.00025	0.015	16.3	0.2	1	23	277	299	277	299	0.96
9	20	3.2e-06	0.0002	22.2	1.9	1	23	305	327	305	327	0.99
10	20	0.00051	0.031	15.3	4.8	1	23	333	355	333	356	0.96
11	20	1.1	67	4.8	2.8	1	23	432	455	432	455	0.94
12	20	2.3	1.4e+02	3.8	0.1	3	23	479	499	478	499	0.95
13	20	0.0069	0.43	11.7	3.1	1	23	521	543	521	543	0.96
14	20	4.6e-05	0.0028	18.6	1.5	1	23	547	569	547	569	0.98
15	20	0.0013	0.078	14.0	0.2	1	23	574	597	574	597	0.95
16	20	0.00078	0.048	14.7	2.7	1	23	603	626	603	626	0.98
17	20	0.013	0.81	10.9	1.6	1	23	633	656	633	656	0.95
18	20	0.00033	0.02	15.9	0.9	1	23	662	684	662	684	0.96
19	20	5.9e-06	0.00037	21.4	0.5	1	23	690	712	690	712	0.99
20	20	4.9e-06	0.0003	21.6	3.0	1	23	718	740	718	741	0.96

Sequence Information

Coding Sequence: ATGCACAAGCGGTCCACCGACCTCAAACTTAAATGGAAACCGAAACGCAAGTATAACGATCACAGAGACAATGCAGCTATTATAATAGAATGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGGGGGACTTTTACGTGCGCCTTCTGTCCCATATCCTTCGGGGACTTTAGCAGCATCCGAGAACATGCGCTCGAGCACCCAAACCGTGTCGAGGCCATGCGATTAGCGCGACCCTTAGACAACGTCAAAGTAGAAATCACTGGGCTTCGCTGCGAACTCTGCTTACTACACATTAAAGACGTAGAGACATTAAAGGAACACCTACTTCAAATCCATGATAAACCTATTAGCATAAATCATGGCATCGGCGTTACTCCTTTCCTTATAGAAGGAAAAGAGTTCGTGTGCACACATTGTGGAGAACACTTTGAGCTGTTTTCAAAATTAAACACACATATGAATAATCATTATCCGAACAACATATGCTTCCAATGCGGCAAAGCATTCTCCGCCGCGCATAGACTTAAAGCTCACTTAGTTATACATGAGGCCTCAAACAGTATGCAGTATAAATGTTCCAAATGCGACGAGGTTTTCGCGACTCGTGCTTTGAAGAATAGCCACATGGCTTTAGCACACGGCCCCGAATATCGATATCGCTGTCCATATTGTAATGACTCGTTTTTAAGATACGCTGATAGGGCAAAGCATCTCAAGATTGCTCACGATAGGAAAGTTGAGTATCCTTGCCATCTATGCACAGCCGTCTTCTCCATGTGCAATCAGAGAACTAAGCATATACAACAAGTACACATTAGACATAAGCAGTTCTTCTGTGCCTTATGCCCGTATCAGTTCGTCACGGCAGCCCAACTTAGGAATcacatggtcaaacatgtaggggaaagaaaataccaatgtcaggtgtgtaagaagtcctacgctagaaccaaaacgttgaaggaacacatgcgtatacataataatgataaacgatttgtttgtgagttttgtaacaacgcttacgtacagaagtgcagccttcagagccatatgagaacgcatcaCCCTAACGCTGAACCTCTAAAGAAACTCAGATTGCCTATGCCTAATTACACACCAGAATCCGCTGTTGAGGTCAAACAAGAATTGGCCGAGGCAGAGGATATTGACGCTGCGTCCGCAGCCGTCAAACGGGAAGAGGGCGAACGGAGACGAACCAACTTTAGAAATAACATCTCCACTATTATAGACACGACCACCGCATACCCCTTCAAATATAGAAGGGGAATATACCTCTGTTACTACTGCAAACACACATTCCTAGAACCAGAAAAGCTACGCCAACACAATCGTATTTATCATTCCGAATCGAAAGTACTCCCGAAACCCAGAAAATATGAACCCGTCAAAATGGACTTCTCAACCGCTCTGTGCAAGCTGTGTTTAACTGAAATTCGCGACTATGCCATGTTGAAAGCACACCTGATCGAACACGGCAAAGAGATAGACAATACTTTTGGAGACAGCGTGCTTCCGTACAAGTTAAGCAAAGACGAGcacgtctgtcaagtgtgtgggaaaacgtatgagatgtttcttagtttacataaacacatgaacgaccactacgaacattatatttgtgagaaatgtggcaaaaggttcgcgacatcgcaacgcatgctcaatcacactcgcactcacgaaaccggcgtgtttccgtgcaagcagtgcgatgagactttctcatcgtacgctcccttgtacacccacgttgctaaggtccatagatttaacaagcgatataaatgtcctatctgtaacgaaaaattcgtgtcttacaagcagagactgaagcacttacacacggtgcatgagcagaaaacgcctgttttcccttgtccctcttgcgacagagttttcgatttatgtagtaagagaacggcacatattaggttccagcatttgcaggagaggaatcatgtgtgcagtgtctgcgggatgaagtttttcagtaattatgagcttcaagaacatgcgatcaagcatggcggggagaggatataccagtgcgatgtctgtaagaaggcgtacgctagaataaagacccttcgggaacatatgcggatacataacaacgacagacgctatacgtgtcccgtatgtgggcagagtttcattcaaaattgtagcatgaagcagcatattagggtgcatcaTCCCACGCATTTGAAAGATGTATTTTAA
Protein Sequence: MHKRSTDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGTFTCAFCPISFGDFSSIREHALEHPNRVEAMRLARPLDNVKVEITGLRCELCLLHIKDVETLKEHLLQIHDKPISINHGIGVTPFLIEGKEFVCTHCGEHFELFSKLNTHMNNHYPNNICFQCGKAFSAAHRLKAHLVIHEASNSMQYKCSKCDEVFATRALKNSHMALAHGPEYRYRCPYCNDSFLRYADRAKHLKIAHDRKVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHVGERKYQCQVCKKSYARTKTLKEHMRIHNNDKRFVCEFCNNAYVQKCSLQSHMRTHHPNAEPLKKLRLPMPNYTPESAVEVKQELAEAEDIDAASAAVKREEGERRRTNFRNNISTIIDTTTAYPFKYRRGIYLCYYCKHTFLEPEKLRQHNRIYHSESKVLPKPRKYEPVKMDFSTALCKLCLTEIRDYAMLKAHLIEHGKEIDNTFGDSVLPYKLSKDEHVCQVCGKTYEMFLSLHKHMNDHYEHYICEKCGKRFATSQRMLNHTRTHETGVFPCKQCDETFSSYAPLYTHVAKVHRFNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHAIKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHLKDVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410563;
90% Identity: iTF_00410563;
80% Identity: -