Camp000496.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:1124136-1125707[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0042 26 5.5 0.0 26 48 79 101 76 107 0.90 2 8 0.12 7.6e+02 0.8 0.1 25 48 108 131 100 137 0.82 3 8 0.015 93 3.7 0.3 21 48 163 190 157 194 0.88 4 8 0.46 2.9e+03 -1.0 0.0 25 48 197 220 192 221 0.81 5 8 0.00073 4.6 7.9 0.1 22 44 253 275 241 283 0.88 6 8 2.4e-05 0.15 12.7 0.1 16 49 315 348 313 352 0.87 7 8 1.4e-05 0.09 13.4 0.4 22 48 349 375 347 380 0.90 8 8 0.019 1.2e+02 3.4 0.2 24 48 381 405 376 411 0.86
Sequence Information
- Coding Sequence
- ATGGACCAAGAAATAGAACAAATCTTCATAAAGCCAGACATTGCTCATTTGAAAGTGGAAGTTGATTGTGAACAGGAATGCAGTGGAAACCCATATCAGCCTCCGGAACATGTGTTCAACATTAAGAGCGGAGACGGAAGTATTCTACCTTATGTAGACACTACCAATGAAAGTCCTAAAACAAACATAGAGATTGTTGGTAAAGTATATGAGAATGGAAAAATAAACAGATTACAGTGCCCACAATGTGATAATACTTTCAAAAATAGAGCCAACTTGAAGCAACATCTCAAGTTTGTGCATTCGTCAGAAGATGACATTGTGGAATGTGATAAATGTTATAGGACTTTCAAGTCTGTCGGTCATTTACGCTCACACATTCACTCTGTTCACGCTGAAGAAAAAGAAGTCAGCTGTGAACATTGCGGTAAAGTGTTCTCAAACAAGAAACGTCTAAACAATCATATTTTCTATTCCCATCCGGAACCAGAAGAAAGCGTCAATTGCAGTGTCTGCTCTAAATCTTTTAAGCGTAGATACAATTTGAAAATACATATGAGACTTGTCCATCCATCAGAAGACAGATCCGTGCAATGCCCACATTGTGACAAGAAGTTTAAAGTAGATATGTTGCTACAGAGACATATAAAGTGGAGTCACCCGCAAGACGGAATGATGTACCGCTGCCCAGAATGCGGAAGAACATTACCATCTATCGCTTGCTTTAGAAAACACATGCAGAATGTACATTCCGGCTCCCAAGATGCTGTTTGCAAAATCTGCTGTAAAGTTTTCAAAACAGTCAAGACTCTAAACAGACATGAAAGAAATATTCACGGAGGAGCGAAAGTTGAAGCTAAACCGTGCAAAGTAGGAGACATACCATGTTCACAGTGTGACAAAAAATTCACGACAAATACAGCTTTATATTGGCATTTCGAGAGACATCATTCAGAGAATAAAAGAAGTAATACTTGCCAGATTTGTAACAAAGAGTTATCCGATCAAGGGAGCTTGAAAAGACATCTAGAAATGGTGCATTCCTTTGATCCTGTCAACTGTCCTATATGCTCAAAAACTTTTAAAAGTCATATGAATTTACAGAGGCATATTAGAGTCACCCATGCCCCGCCAGAAGCGGCCCAGAAGTGCGACATTTGCAACAAAACTTTCAAATGCTCTATGCATTTACGGATACATATAAACGCCGTACACTCTACAGAAGGCATATTCACCTGTGATATTTGCAATAAAGAATTTGCATCAAAGAAATATATGTTGAAACATAAGAAAACTCATGTAGACGTGAAACTGTTTCCATGTGGAGTTTGTAGCAAGATGTTTAAGTGTGTTAATGATGTTAAAAAGCATACAAAACGGGTGCATATGAAGACACCAGTGAAAACAGAAATTGTAGAAAGCCAAGATGATATAGAAGCTAATACGGAAACACTGAATTGTTCGAAATGTGGTGGTGATTTTGAGAATGAAACAGAGTTACATTCGCATATTATGAACTGTGGCGAGCTCCCAGCGCTTGCGTTTGTGAAGGTTGAATTGCAAGATTTGTAG
- Protein Sequence
- MDQEIEQIFIKPDIAHLKVEVDCEQECSGNPYQPPEHVFNIKSGDGSILPYVDTTNESPKTNIEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAEEKEVSCEHCGKVFSNKKRLNNHIFYSHPEPEESVNCSVCSKSFKRRYNLKIHMRLVHPSEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAVCKICCKVFKTVKTLNRHERNIHGGAKVEAKPCKVGDIPCSQCDKKFTTNTALYWHFERHHSENKRSNTCQICNKELSDQGSLKRHLEMVHSFDPVNCPICSKTFKSHMNLQRHIRVTHAPPEAAQKCDICNKTFKCSMHLRIHINAVHSTEGIFTCDICNKEFASKKYMLKHKKTHVDVKLFPCGVCSKMFKCVNDVKKHTKRVHMKTPVKTEIVESQDDIEANTETLNCSKCGGDFENETELHSHIMNCGELPALAFVKVELQDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00409524;
- 80% Identity
- iTF_00409524;