Cper013069.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydalima perspectalis
Gene Symbol
-
Assembly
GCA_951394215.1
Location
OX596214.1:8515163-8528017[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.6e-05 0.0075 17.2 0.1 3 23 134 154 133 154 0.97
2 18 8.7e-07 6.8e-05 23.6 1.2 1 23 160 182 160 182 0.99
3 18 5.4e-06 0.00042 21.1 2.7 1 23 188 210 188 210 0.99
4 18 3.7e-06 0.00029 21.6 2.6 1 23 225 247 225 247 0.98
5 18 8.6e-05 0.0067 17.3 0.6 1 23 262 284 262 284 0.98
6 18 4.9e-05 0.0039 18.1 3.1 1 23 299 321 299 321 0.98
7 18 3.4e-07 2.7e-05 24.9 1.5 1 23 336 358 336 358 0.99
8 18 0.00015 0.012 16.6 2.8 1 23 364 386 364 386 0.98
9 18 1.1e-05 0.00084 20.2 2.1 1 23 392 414 392 414 0.99
10 18 0.035 2.7 9.1 1.8 1 23 421 443 421 443 0.98
11 18 5.8e-07 4.6e-05 24.2 2.3 1 23 449 471 449 471 0.99
12 18 0.04 3.2 8.9 1.8 1 23 478 500 478 500 0.98
13 18 2.4e-06 0.00019 22.2 1.5 1 23 506 528 506 528 0.99
14 18 0.0018 0.14 13.2 0.3 1 23 535 557 535 557 0.98
15 18 1.5e-06 0.00012 22.9 1.9 1 23 563 585 563 585 0.98
16 18 0.0019 0.15 13.1 0.3 1 20 591 610 591 613 0.93
17 18 3.7e-05 0.0029 18.5 1.4 2 23 620 641 619 641 0.96
18 18 3.4e-06 0.00027 21.8 1.4 1 23 647 670 647 670 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATAAAGGCAGAGCCTATGAGTTTCTACACATCCCATCCCCACGTCCACTCTGGTCCCCCAACAATAGTCCGGTCTGACTCCAGTCACCCAATCATCAACATGAACCAACACCATCAGTCACATCAAGAGGACTCCAAGGACAGTCTTATAGTACAACAACAAGTACAACAACATCAACAGGAGCTTATGGAACAACACCAACAACAGGAACTACAGCAACAAGATGATGAGctAAGTTTTAAAGGAATGGATGATGAAGGAGTAGAAATGGAAATGGATAGCAGACAATGCTCCCAgGGCATGGGAGTAGATATGGGATCCGTTCAAACCAAAATGGAAGTGTCAAATGGGGGTCAGCCAGCTCCGCGTTCAAAACCCCAAGCTTGCAAGGTTTGCGGCAAAGTGCTATCATCTGCTTCATCTTACTATGTCCATATGAAGCTTCACTCAGGAAACAAGCCCTTCCAGTGTACTGTTTGCGACGCGGCGTTCTGCCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGCCCGTTCCAGTGCGACCTGTGCCTCAAGCGCTTCACACAAAAGTCCAGTCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGACCTCTGTCAGATGCGGTTTACGCAGAGTTCCAGCCTCAACCGACACAAGAAAATACATACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGCCCCTACCAGTGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAACACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAACGTATACATACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGCCCCGCAGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCACACCGGGGAGCGCCCATATCAGTGCGACATCTGCCTGAAGCGCTTCACCCAGAAATCCAGTCTCAACATTCACAAGCGGACCCATTCAGTTCAGGGCCGCCCGTTCCAATGCCTGCAGTGCCCGGCCGCGTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACGGGCGAGCGCCCTTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACTCTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATGCATGCATGGAGTGCCCGGCGGCGTTCACATGCAAGCCGTACCTGGAGATCCATATGCGCACGCACACTGGCGAGCGGCCGTTCGAGTGTGATATCTGTTACAAGCGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATACATACCGGGGAACGACCATATGCTTGTGATATTTGTCAGAAAAGATTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCCCACGTGGCGGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACTTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCTGCGGGGCCCTGCTACGAGTGCAGCGTCTGCGGCCGCACTTTCGTCAGGGACAGCTATCTTATAAGACATCACAACCGTGTGCACCGCGAGAACCACAGCAATGTGTCGGCCAACAGCATTGGCACCATCAACAGCGTGGCCACCAACACAAACAACTCGAACAGCAACTATGATTCGCCCGGCGTTTGTGACTTAAGCTTTGTGCCGATGGTGAATCGCTACATGACTTCTCAAGGCACACAGGTGTCTATGCAAGATACGCAGAGCAAGATGTCAGCTATGTCGCCGCAGTCCATCGCGTCAATatCTTCACCCCCTCCTCCGCATACCCCAACTCCCCAGCCGCAGATGTCTGGACAAATGCATCTTGGAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIVRSDSSHPIINMNQHHQSHQEDSKDSLIVQQQVQQHQQELMEQHQQQELQQQDDELSFKGMDDEGVEMEMDSRQCSQGMGVDMGSVQTKMEVSNGGQPAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYACMECPAAFTCKPYLEIHMRTHTGERPFECDICYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01125669; iTF_00429226; iTF_00752271; iTF_01124787; iTF_00365108; iTF_00683545; iTF_00681802; iTF_00279315; iTF_00076799; iTF_01071807; iTF_00682656;
80% Identity
-