Nnoc014647.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomophila noctuella
Gene Symbol
-
Assembly
GCA_958496325.1
Location
OY292497.1:6862661-6874929[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.3e-05 0.0075 17.3 0.1 3 23 133 153 132 153 0.97
2 17 8.4e-07 6.8e-05 23.7 1.2 1 23 159 181 159 181 0.99
3 17 5.3e-06 0.00042 21.2 2.7 1 23 187 209 187 209 0.99
4 17 2.1e-06 0.00017 22.5 1.7 1 23 224 246 224 246 0.98
5 17 4.8e-05 0.0039 18.2 3.1 1 23 261 283 261 283 0.98
6 17 3.3e-07 2.7e-05 25.0 1.5 1 23 298 320 298 320 0.99
7 17 0.00015 0.012 16.6 2.8 1 23 326 348 326 348 0.98
8 17 1e-05 0.00084 20.3 2.1 1 23 354 376 354 376 0.99
9 17 0.034 2.7 9.2 1.8 1 23 383 405 383 405 0.98
10 17 5.7e-07 4.6e-05 24.2 2.3 1 23 411 433 411 433 0.99
11 17 0.039 3.2 9.0 1.8 1 23 440 462 440 462 0.98
12 17 2.3e-06 0.00019 22.3 1.5 1 23 468 490 468 490 0.99
13 17 0.00044 0.035 15.1 0.7 1 23 497 519 497 519 0.99
14 17 1.4e-06 0.00012 23.0 1.9 1 23 525 547 525 547 0.98
15 17 0.0019 0.15 13.2 0.3 1 20 553 572 553 575 0.93
16 17 3.6e-05 0.0029 18.6 1.4 2 23 582 603 581 603 0.96
17 17 3.3e-06 0.00027 21.8 1.4 1 23 609 632 609 632 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCAGAGCCGAGTATGAGTTTCTACACCCATCCCCACGTCCACTCCGGTCCCCCAACAATAGTCCGGTCAGAGTCGAACCACCCGATAATCAACATGAACCAGCATCACCAGCACCAGGAAGACTCCAAGGATAGTCTCATAGTACAACAACAAGTACAACAGCATCAACAGGAGCTTATGGAACAACACCAACAACAGGAATTACAGCAGCAGGATGATGAGTTAAGTTTCAAGGGAATGGATGATGAAGGAGTTGAAATGGACATGGATAGCAGGCAGTGCTCCCAGGGCATGGGAGTAGACATGGGATCAGTGCAAACAAAAATGGAGGTGTCAAATGGTGGCCAGTCAGCTCCCCGTTCAAAACCTCAAGCCTGCAAGGTCTGTGGTAAAGTCCTATCATCTGCTTCATCATACTATGTCCATATGAAACTTCACTCGGGAAACAAGCCCTTCCAATGTACTGTTTGCGACGCAGCGTTCTGCCGCAAGCCGTACCTTGAGGTGCACATGCGCACGCACACCGGCGAGCGGCCCTTCCAATGCGACCTCTGCCTCAAGCGGTTCACGCAGAAGTCCAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACACGCGCGCGTTGCTGGCGAAGGACCGGCCCTACATGTGTGAGATCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAACGTATACATACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCGTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAATCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATACACACGCGCACCCACACCGGGGAGCGCCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACCCAGAAATCCAGTCTCAACATCCACAAGCGGACACACTCAGTGCAGGGCCGCCCGTTCCAATGCCTGCAGTGCCCGGCCGCGTTCACCTGCAAGCAGTATCTCGAGATACACAACCGCACGCATACGGGCGAGCGTCCTTACCAATGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCCACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATCCATATGCGCACGCACACGGGCGAGCGTCCGTTCGAGTGCGATATCTGTTACAAGCGCTTCACGCAGAAATCAACGCTGAACATTCACAAGCGAATCCACACCGGGGAACGACCATATGCTTGTGATATTTGTCAGAAAAGATTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCTCACGTGGCGGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGCCCGTGCTACGAGTGCAGCGTCTGCGGACGCACCTTCGTCAGGGACAGCTATCTCATAAGACATCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATCGGCACCATCAACAGCGTCGCCACCAACACCAACAACTCCAACAACAGCAACTTCGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTGCCAATGGTGGTGCCGAACCGCTACATGACATCTCAGGGCACCCAGGTGTCGATGCAGGATACGAGCAAGATGTCAGCTATGTCGCCGCAGTCGATCGCCTCAATATCGTCGCCCCCTCCCCCACATACCCCTACACCCCAGCCGCAAATGTCTGGACAAATGCACCTTGGAGACTGA
Protein Sequence
MFEQQIKAEPSMSFYTHPHVHSGPPTIVRSESNHPIINMNQHHQHQEDSKDSLIVQQQVQQHQQELMEQHQQQELQQQDDELSFKGMDDEGVEMDMDSRQCSQGMGVDMGSVQTKMEVSNGGQSAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHTRALLAKDRPYMCEICQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDICYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVVPNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
iTF_00408638;
80% Identity
-