Ofur001496.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ostrinia furnacalis
Gene Symbol
-
Assembly
GCA_004193835.1
Location
NW:706271-728995[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 8.8e-05 0.0044 17.2 0.1 3 23 139 159 138 159 0.97
2 18 8e-07 4e-05 23.6 1.2 1 23 165 187 165 187 0.99
3 18 5e-06 0.00025 21.1 2.7 1 23 193 215 193 215 0.99
4 18 3.4e-06 0.00017 21.6 2.6 1 23 230 252 230 252 0.98
5 18 0.00014 0.0071 16.5 0.6 1 23 267 289 267 289 0.98
6 18 4.6e-05 0.0022 18.1 3.1 1 23 304 326 304 326 0.98
7 18 3.2e-07 1.6e-05 24.9 1.5 1 23 341 363 341 363 0.99
8 18 0.00014 0.0069 16.5 2.8 1 23 369 391 369 391 0.98
9 18 9.9e-06 0.00049 20.2 2.1 1 23 397 419 397 419 0.99
10 18 0.032 1.6 9.1 1.8 1 23 426 448 426 448 0.98
11 18 5.4e-07 2.7e-05 24.2 2.3 1 23 454 476 454 476 0.99
12 18 0.037 1.8 8.9 1.8 1 23 483 505 483 505 0.98
13 18 2.2e-06 0.00011 22.2 1.5 1 23 511 533 511 533 0.99
14 18 0.0015 0.073 13.3 0.3 1 23 540 562 540 562 0.98
15 18 2.7e-06 0.00014 21.9 2.0 1 23 568 590 568 590 0.98
16 18 0.0018 0.087 13.1 0.3 1 20 596 615 596 618 0.93
17 18 3.4e-05 0.0017 18.5 1.4 2 23 625 646 624 646 0.96
18 18 3.1e-06 0.00015 21.7 1.4 1 23 652 675 652 675 0.97

Sequence Information

Coding Sequence
ATGTTTGAGCAGCAAATCAAGGCAGAGCCCATGAGtttctaCTCATCCCATCCACATGTCCACTCCGGTCCCCCATCAATAGTCCGGCCCGACTCCAACCATCCGATCATCAACATGAACCAGCATCACCAGTCACATCAGGAAGACTCCAAAGACAGTCTCATAGTACAACAACAAGTACAACAACACCAGCAGGACCTTATGGAACAACACCAACAACAAGAATTACAGCAGCAAGATGATGAGCTCAGTTTCAAGGGAATGGATGATGAGGGTGTAGACATGGACATGGATAGCCGACAGTGCTCTCAGAAAGCTTATTTACAGGGTATGGGCGTGGATATGGGCTCTGTTCAGACAAAAATGGAGGTACCAAATGGGGGCCAATCAACCCCTCGATCAAAACCTCAAGCTTGcaaagtCTGCGGTAAAGTGCTATCATCTGCTTCATCGTATTATGTCCACATGAAACTTCATTCTGGCAATAAACCCTTCCAGTGTACGGTTTGCGACGCAGCTTTTTGCCGCAAGCCTTACCTGGAGGTCCATATGCGTACGCACACAGGCGAACGCCCGTTTCAGTGCGACCTTTGCCTGAAGCGATTCACGCAGAAATCCAGTCTCAATACGCACAAACGCGTCCACACTGATGAGCACACGCGCGCGTTGCTGGCGAAGGACCGGCCCTACAAGTGTGACCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAAGCGCGCGCTGCTGGCTAAGGAACGACCCTACCAGTGCGGCGTCTGCTTTGTGCGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTTGGCCGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACTCGCACGCACACCGGGGAGCGCCCGTATCAGTGCGACATCTGCCTCAAGCGGTTCACCCAGAAATCCAGTCTGAACATCCACAAGCGGACCCACTCAGTGCAGGGCCGGCCGTTCCAATGCCTGCAGTGCCCGGCCGCCTTCACTTGCAAGCAGTATCTAGAGATCCACAACCGCACGCATACCGGCGAGCGCCCTTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCGACACTCAATATACATAAACGAACGCACACAGTGCAAGGGCGGCCGTACGCCTGCCTGGAGTGCCCGGCGGCGTTCACGTGCAAGCCGTACCTGGAGATTCACATGCGAACGCACACGGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTTCAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATACACACCGGTGAGCGACCGTACGCTTGTGATATTTGTCAGAAAAGATTTGCTGTGAAGAGTTATGTAACGGCACACAGATGGTCGCACGTGGCTGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGGCCCTGCTACGAGTGCAGCGTCTGCGGGCGCACCTTCGTGCGGGACAGCTATCTCATAAGACATCACAACCGCGTGCACCGCGAAAACCACAGCAACATGTCGGCCAACAGCATCGGCACCATCAACAGCGTCGCCACCAACACCAATAACTCCAGCAGCAACTACGACTCGCCCGGCGTTTGTGACTTAAGcttcgTGCCTATGGTGAACCGCTACATGACCTCTCAAGGCACGCAGGTTTCGATGCAAGATACTCAGAGCAAGATGTCAGCTATGTCGCCGCAGTCTATCGCGTCAATATcttCGCCTCCTCCTCCACACACCCCAACACCGCAGCCCCAGATGTCTGGACAGATGCATCTTGGAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHPHVHSGPPSIVRPDSNHPIINMNQHHQSHQEDSKDSLIVQQQVQQHQQDLMEQHQQQELQQQDDELSFKGMDDEGVDMDMDSRQCSQKAYLQGMGVDMGSVQTKMEVPNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHTRALLAKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYACLECPAAFTCKPYLEIHMRTHTGERPFECDVCFKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTINSVATNTNNSSSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00408638;
80% Identity
-