Calb005562.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963082685.1
- Location
- OY720117.1:1003171-1018614[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.68 5.5e+03 -3.2 0.6 47 68 73 94 39 103 0.45 2 3 8.2e-76 6.7e-72 242.8 23.5 1 297 117 395 117 398 0.88 3 3 3 2.4e+04 -6.4 10.0 129 166 426 463 401 472 0.58
Sequence Information
- Coding Sequence
- ATGGGCCATCGGTCAGAGAGTGCCACGCCGGACAACAGCGACGAGGAGAGCGGCGACGCCTTCACCGACGGGGACTTCGAGGACTCCGACGATGACACCCTCGTCGAGAGGAACGACCATTCCCCCGCCGCCGTCGCAGAGGCACGCAACGAAGACGTGCAGAACAAACTCACCAACGGCAGCTGCGCAGGCAATTCCACGCTGGAAACTAAAGTCAATGGACACACCAACAGCAGTGAAAATAATTCAAGTGATGTAGACAGTGGTAGCGGAACAGAAGCGAGGCGCGACTCTCACGGAGACCAGAACCCCTCGATTGTGGGCATCCTCGGAGATCAACACTGTCATGCTGAACAGAGACTCGCGGCGCGacgagcggcgcgggcggaGGCGCGCGAGATCCGCATGCGAGAGCTCGAGAGACAACAGCGGGAACAGGAGGACCATGCCGACAAGGCGTATGATATGTATACAGAGTCAGTGGGTCGCCGCGGCGGCACGCGGCTGGCGTCGCTGGGGCCGGCCGCCGCGGCGCTGTCTCCGCGCCGCAGCTCCGAGGACTCCAACGACGACGCTTTCAATATTAAGGATTTGAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGCCTCGAGGAGCTGCAGGAAGACCACGCGCAGCTGACCCGCGAGCACCGCGAGAAGTGCTCGTCGCTGGAGCGCACGCGGCGGTCGCTGGCGAGCGCGGAGCGCGAGGTGGAGCTGGGGCGCGCggcgctgcgcgcgcgcggcgccgcggccgAGCGCGCCGGGCTCGTGTTCGTggaggcgggcggcgcggcgccgggcgCGCTCGTGCCGCCGCTGGCGCTCGTGTCCGCCGCCGCGCACCAGCTGCTCGCCGACGCCGGCGAGGGCACGCTCGACGTGCGATTAGAGAAGCTGGCGAGTTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAggagcgcgcggcgcggcagAACGGCGTCGCCAACCACCACGACGACGAGTACGAGAACGAGCTGGAGAGCGTGCGGCGCGCGGTGACGGAGGCGAaggggcgcgcggcgcgcgcggaggcggaggcggcgctgcaggccgccgccgccgcgcgcctcgAGGCGCAGGTGGCGCGCTTCCGCGCCAAGGCCGACCTGCACGACGCCGCCGAGGAGCAGCTCAAGTCCGAGCGCCGCCGCCTGCAGAGAGAGgCCAGAGAAGCACTGAACCGAGTGGAGGAGTTGGAGACGGAAAACAGTCACCTCACGAAAAGACTGGATAAGCTGAAGAACGCCAAGTCAGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSESATPDNSDEESGDAFTDGDFEDSDDDTLVERNDHSPAAVAEARNEDVQNKLTNGSCAGNSTLETKVNGHTNSSENNSSDVDSGSGTEARRDSHGDQNPSIVGILGDQHCHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTESVGRRGGTRLASLGPAAAALSPRRSSEDSNDDAFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRLEELQEDHAQLTREHREKCSSLERTRRSLASAEREVELGRAALRARGAAAERAGLVFVEAGGAAPGALVPPLALVSAAAHQLLADAGEGTLDVRLEKLASSKQALESEVRKLKLQLNEERAARQNGVANHHDDEYENELESVRRAVTEAKGRAARAEAEAALQAAAAARLEAQVARFRAKADLHDAAEEQLKSERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00407603; iTF_01443865;
- 90% Identity
- iTF_00407603;
- 80% Identity
- -