Cpun004782.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951394245.1
- Location
- OX596172.1:1017167-1028257[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.86 6.8e+03 -3.6 1.1 47 66 74 93 37 104 0.44 2 3 1.2e-75 9.7e-72 242.2 24.2 1 297 118 396 118 399 0.88 3 3 3 2.4e+04 -5.7 9.2 129 166 427 464 403 472 0.59
Sequence Information
- Coding Sequence
- ATGATGGGCCATCGGTCGGAGAGTGCCACGCCGGACAACAGCGACGAGGAGAGCGGCGAAGCCTTCACCGACGGCGACTTCGAGGACTCCGACGATGACACCCTCGTCGAGAGGAACGACCACTCCCCCGCCACCGTCACAGAGGCACGCAACGATGACGTGCAGAACAAACTCACCAACGGCAGCTGCGCAGGCAATTCCACGCTGGAAACTAAAGTCAATGGACACACCAACAGCAGTGAAAATAATTCAAGTGATGTAGACAGTGGTAGCGGAACAGAAGCGAGGCGCGACTCTCACGGAGACCAGAACCCCTCGATTGTGGGCATCCTCGGAGATCAACACTGTCATGCTGAACAGAGACTCGCGGCGCGacgagcggcgcgggcggagGCGCGCGAGATCCGCATGCGAGAGCTCGAGAGGCAACAGCGGGAACAGGAGGACCATGCCGACAAGGCGTATGATATGTATACAGAGTCAGTGGGGCGCCGCGGCGGCACGCGGCTGGCGTCGCTGgggccggccgccgcggcgctGTCTCCGCGCCGCAGCTCCGAGGACTCCAACGACGACGCTTTCAATATTAAGGACTTGAGGCACGAGCTGAAGGAGGTGGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAGGCGGCACTCGGCTACCAGCTCGAGCTGCTCAAGGACCGCCTCGAGGAGCTGCAGGAAGACCACGCGCAGCTGACCCGCGAGCACCGCGAGAAGTGCTCGACGCTGGAGCGCACGCGGCGGTCGCTGGCGAGCGCGGAGCGCGAGGTGGAGCTggggcgcgcggcgctgcgcgcgcgcggcgccgcggccgAGCGCGCCGGGCTCGTGTTCGTggaggcgggcggcgccgcgcccgcggacCTGGTGCCGCCGCTGGCGCTCGTGTCGGCCGCCGCGCACCAGCTGCTCGCCGACGCCGGCGAGGGCACGCTCGACGTGCGATTAGAGAAGCTTGCGAGTTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAggagcgcgcggcgcggcagAACGGCGTCGCCAACCACCACGACGACGAGTACGAGAACGAGCTGGAGAGCGTGCGGCGCGCGGTGACGGAGGCGAaggggcgcgcggcgcgcgcggaggcggaggcggcgctgcaggccgccgccgccgcgcgcctcgAGGCGCAGGTGGCGCGCTTCCGCGCCAAGGCCGACCTGCACGACGCCGCCGAGGAGCAGCTCAAGTCCGAGCGCCGCCGCCTGCAGAGAGAGGCCAGAGAAGCACTGAACCGAGTGGAGGAGTTGGAGACGGAAAACAGTCACCTCACGAAAAGACTGGACAAGCTGAAGAACGCCAAGTCAGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MMGHRSESATPDNSDEESGEAFTDGDFEDSDDDTLVERNDHSPATVTEARNDDVQNKLTNGSCAGNSTLETKVNGHTNSSENNSSDVDSGSGTEARRDSHGDQNPSIVGILGDQHCHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTESVGRRGGTRLASLGPAAAALSPRRSSEDSNDDAFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRLEELQEDHAQLTREHREKCSTLERTRRSLASAEREVELGRAALRARGAAAERAGLVFVEAGGAAPADLVPPLALVSAAAHQLLADAGEGTLDVRLEKLASSKQALESEVRKLKLQLNEERAARQNGVANHHDDEYENELESVRRAVTEAKGRAARAEAEAALQAAAAARLEAQVARFRAKADLHDAAEEQLKSERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406769;
- 90% Identity
- iTF_00406769;
- 80% Identity
- -