Tcom006496.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958496195.1
- Location
- OY292358.1:11521938-11533504[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-77 1.9e-72 244.7 25.0 1 297 119 397 119 399 0.89 2 2 0.01 2.8e+02 1.2 11.9 191 270 378 455 362 470 0.65
Sequence Information
- Coding Sequence
- ATGATGGGCCATCGATCAGAAACTGCTACGCCTGATAACAGCGACGAGGAGAGTGGAGAAGCCTTCACCGATGGTGATTTCGAGGACTCCGACGAAGATACCCTCGTCGAAAGAGCTGACACATCGACTATTCCTGTCACCGAGACCATCAATAAAGAAGTTCAAAAGAAACTAACCAACGGCAGTTGTTCTGAAAAGCCGCCTCTATCGGAGGTTAAAGTGAATGGACGAACGAATAGTGAGAATAATGGGAGCGATGTGGAAGGCTACAGCGGGACTGCTGATGTAAGACGCGACTCTCACGGAGACCAGAATCCTTCGATAGTTGGAATTCTCGGAGATCAACATAATCATGCTGAACAGAGATTGGCCGCGAGACGAGCGGCGCGGGCCGAGGCGAGGGAAATCCGGATGCGTGAGCTAGAGAGACAGCAACGGGAACAGGAGGACCATGCAGACAAAGCATACGATatgtatagtgAGTCAGTGGGTCGTCGCGCAGGCACCCGGCTGGCCGCGCTCAGCCCCGCCACCACCGTCCACTCGCCGAGGCGGAGCTCTGAGGACTCCGTTGACGAGAGCTTCAGTATTAAGGATTTGAGGCACGACTTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCGCGTACCAGCTCGAGCTGCTCAAGGACCGGCTCGAGGAGCTGCACGAGGACCACGCGCAGCTGACGCGCGAGCACCGCGAGAAGTGTTCGTCCCACGAGCGGTTGAAGCGGGAGTTGGCGTCGGCCGAGCGCGAGGTGTCCCTAGCGCGCGAGGCggtggcggcgcgcgcggcggcggccgaCGCGGCCGGGCTCGCCTTCGTGGAGGCGGGGCCCGCGCCGCCGGGGGCCCGCGTGCCGCCGCTCGCGCTCGTGTCGCACCGCGCCAGCGAGATGCTCAACGATCTCGGGGACGGCACGCTCGACGTCCGGCTGGAGAAATTGTCGAGTTCTAAACAGGCGCTGGAGTCGGAGGTGCGCAAACTGAAACTGCAGTTGAACGAAGAACGCGCCGCGAGACAAAACGGGGTCGCCAACCACCACGACGAGGACTACGAGAACGAATTGGAGAGCGTGCGGCGGTCGCTGACGGAGGCGAAGGcccgcgcggcgcgcgcggagGCGGAGGCGGCGCTGCAGGCGGCCGGCGCCGCAAGGCTCGACGCGCAGCTCGCGCGGCTCCGGGCCCGCCAGGAGCTGCACGACGAGCGCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCGAGGGAGGCCCTCAACCGAGTGGAGGAGCTGGAGACGGAGAACAGTCACCTAACGAAACGTTTGGACAAACTGAAGAACGCCAAGTCAGCGCTACTCAAGGACCTGTGA
- Protein Sequence
- MMGHRSETATPDNSDEESGEAFTDGDFEDSDEDTLVERADTSTIPVTETINKEVQKKLTNGSCSEKPPLSEVKVNGRTNSENNGSDVEGYSGTADVRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSESVGRRAGTRLAALSPATTVHSPRRSSEDSVDESFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALAYQLELLKDRLEELHEDHAQLTREHREKCSSHERLKRELASAEREVSLAREAVAARAAAADAAGLAFVEAGPAPPGARVPPLALVSHRASEMLNDLGDGTLDVRLEKLSSSKQALESEVRKLKLQLNEERAARQNGVANHHDEDYENELESVRRSLTEAKARAARAEAEAALQAAGAARLDAQLARLRARQELHDEREEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406769;
- 90% Identity
- -
- 80% Identity
- -