Cqui014564.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:196064028-196065978[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2 7.3e+03 -3.1 0.0 25 43 148 166 140 170 0.68 2 9 0.0013 4.7 7.2 0.0 21 52 231 262 223 263 0.87 3 9 0.00063 2.3 8.1 0.1 23 44 261 282 257 286 0.89 4 9 0.00013 0.5 10.3 0.2 21 45 287 311 283 316 0.89 5 9 0.076 2.8e+02 1.5 0.1 22 48 341 367 323 372 0.79 6 9 2.9e-05 0.11 12.4 0.2 20 52 368 400 359 401 0.81 7 9 0.0002 0.75 9.7 0.1 21 45 425 449 420 456 0.86 8 9 0.00067 2.5 8.0 0.0 21 52 453 484 449 485 0.88 9 9 0.00024 0.88 9.5 0.7 20 48 480 508 477 516 0.82
Sequence Information
- Coding Sequence
- ATGCTTGGTGGTAAATACAGCGAGCCACCAGAGGCCGCCCGAAATCGACCAAATCCTGTGGTAATGTCCATGATGGTGCCACCGCCCCCGCTATATCCAGCACCTTCCTTGGTTACAACCCCGACAACAGTAGTCCCGTCCACGGCTGTCCGTCGACCACCGAATGACTCATCATCTGCTGAAGATGGATCCACCACCTCGTCCACGACGCTTCAGTACCAGTGTCAACTGTGTTTAAAGTGCTTCGCTAGTGTGGCCACCCTAACGGCTCACTTGAGCACACACGAACAAGACTACCGGCACGCAAGCTCCGGCTATAATGGACAACAGCTGGTGGCCTCAGGTGCCGTCATCAAGTCAGAGCCGCAACCCTTCCAATTGCTGTCGCCTCCGATTTACCCAGGATTTCAGGTGGCATCCGGTTCCGGAACTACGACTGGTCAGGCGTGTCAAATTTGTCAGAAGATCTTCAGCACGGGTGACCAGTTCCAGGCCCACATGAAAATCCACGAGAACGAGTTTCGTAACCGGGCTCTGTACCAGGCCGGAAgtgtccagcagcagcagatacAGGTGAAGGAACAAGAGCCGGAAGAGGCTGGCGATGGAAATCCAGTTGACTGCATTATGTGTCATAAGAAGTTTCCAACGGCGGCTTCGTTAGCGATTCATTTGCGTGAGCACAGAGAAGTCAAGAAACCTTACAATTGCTCTGTTTGTGGCAAAGGTTTTATACAGTCAAACAATTTATCGACGCATATGAAAATTCACTCAGGATCTAAACCGTATAAATGTGAAATATGTTTGAAGCAATTTAGCCAATCAAATAATTTGAAGACACACATTCGCACCCATACGAACGAACGTCCATTCGCATGTCCAATTTGCGAAAAAAGATTTAATCAGAAGAACAATCTGACTACACACATGCGAACCCATTCGCTAATCTGCAAGGTCTGCCAGGCCCAGTTCAATCACCCAACAGAACTGACCAAACATGTACGCGTTTGCTACGCAGACCTCAAGCCGAACATTTGTACGGTGTGCAACAAAGTGTTTATAAACAACGAAGAACTAACCGAACACACGAACAAGCAGCACAACCAGGTCAAACCACATCGCTgtcaaatatgtttaaaaaccTTCACCCAGTCCAACAATCTCAAAACGCACATGAAAACTCACATCTTCATGGATCCATTCAAATGTCACTTTTGTTCGAGGTCCTTCCAGAACGAGGAAGAATTCGCTCGCCACTCGCTGGTCCATTCATCGCCAAAACCATTCAGCTGTCCGTATTGCAACAAGCAGTTTATCCAATCCAACAACCTTAAAACACACGTCCGTACGCATACAGGCGAAAAGCCGTACAAATGTTTCGTGTGCGATCGTCTTTTCAACCAGAAAAACAACCTCAACACACACCTACGAATTCATCAGGGACTCAAACCCTACCAGTGCACAATATGCCAGAAGCGGTTCAACCAGTCCAACAATCTCAACAAGCACATTTATAAAGTTCACTGTCACGATAAGATACCCGGAGTTcctcagcagcaacaacagccgCCACCACCGGTCAACGGTCCTATCGATGGACTTGGAACCGTTGCTCAGAGTTGA
- Protein Sequence
- MLGGKYSEPPEAARNRPNPVVMSMMVPPPPLYPAPSLVTTPTTVVPSTAVRRPPNDSSSAEDGSTTSSTTLQYQCQLCLKCFASVATLTAHLSTHEQDYRHASSGYNGQQLVASGAVIKSEPQPFQLLSPPIYPGFQVASGSGTTTGQACQICQKIFSTGDQFQAHMKIHENEFRNRALYQAGSVQQQQIQVKEQEPEEAGDGNPVDCIMCHKKFPTAASLAIHLREHREVKKPYNCSVCGKGFIQSNNLSTHMKIHSGSKPYKCEICLKQFSQSNNLKTHIRTHTNERPFACPICEKRFNQKNNLTTHMRTHSLICKVCQAQFNHPTELTKHVRVCYADLKPNICTVCNKVFINNEELTEHTNKQHNQVKPHRCQICLKTFTQSNNLKTHMKTHIFMDPFKCHFCSRSFQNEEEFARHSLVHSSPKPFSCPYCNKQFIQSNNLKTHVRTHTGEKPYKCFVCDRLFNQKNNLNTHLRIHQGLKPYQCTICQKRFNQSNNLNKHIYKVHCHDKIPGVPQQQQQPPPPVNGPIDGLGTVAQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401911; iTF_00401372; iTF_00400805;
- 90% Identity
- iTF_00401911; iTF_00401372; iTF_00400805;
- 80% Identity
- iTF_00401911;