Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:196064028-196065978[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00013 0.0037 17.4 1.2 1 23 73 95 73 95 0.99

2 13 2.7e-05 0.00078 19.5 0.3 3 23 150 170 149 170 0.98

3 13 0.0024 0.068 13.4 0.4 5 23 210 228 207 228 0.93

4 13 5.6e-07 1.6e-05 24.8 0.4 1 23 235 257 235 257 0.98

5 13 3e-07 8.4e-06 25.7 2.0 1 23 263 285 263 285 0.99

6 13 2.7e-08 7.8e-07 29.0 1.3 1 23 291 313 291 313 0.98

7 13 0.0014 0.04 14.1 0.2 2 21 316 335 315 336 0.93

8 13 3.6e-05 0.001 19.1 0.4 3 23 346 367 345 367 0.96

9 13 2.3e-06 6.5e-05 22.9 5.1 1 23 373 395 373 395 0.98

10 13 0.0022 0.064 13.5 3.1 1 23 401 423 401 423 0.97

11 13 2.3e-07 6.6e-06 26.0 1.8 1 23 429 451 429 451 0.98

12 13 6.7e-06 0.00019 21.4 1.9 1 23 457 479 457 479 0.99

13 13 8.2e-07 2.3e-05 24.3 2.2 1 23 485 508 485 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00013	0.0037	17.4	1.2	1	23	73	95	73	95	0.99
2	13	2.7e-05	0.00078	19.5	0.3	3	23	150	170	149	170	0.98
3	13	0.0024	0.068	13.4	0.4	5	23	210	228	207	228	0.93
4	13	5.6e-07	1.6e-05	24.8	0.4	1	23	235	257	235	257	0.98
5	13	3e-07	8.4e-06	25.7	2.0	1	23	263	285	263	285	0.99
6	13	2.7e-08	7.8e-07	29.0	1.3	1	23	291	313	291	313	0.98
7	13	0.0014	0.04	14.1	0.2	2	21	316	335	315	336	0.93
8	13	3.6e-05	0.001	19.1	0.4	3	23	346	367	345	367	0.96
9	13	2.3e-06	6.5e-05	22.9	5.1	1	23	373	395	373	395	0.98
10	13	0.0022	0.064	13.5	3.1	1	23	401	423	401	423	0.97
11	13	2.3e-07	6.6e-06	26.0	1.8	1	23	429	451	429	451	0.98
12	13	6.7e-06	0.00019	21.4	1.9	1	23	457	479	457	479	0.99
13	13	8.2e-07	2.3e-05	24.3	2.2	1	23	485	508	485	508	0.97

Sequence Information

Coding Sequence: ATGCTTGGTGGTAAATACAGCGAGCCACCAGAGGCCGCCCGAAATCGACCAAATCCTGTGGTAATGTCCATGATGGTGCCACCGCCCCCGCTATATCCAGCACCTTCCTTGGTTACAACCCCGACAACAGTAGTCCCGTCCACGGCTGTCCGTCGACCACCGAATGACTCATCATCTGCTGAAGATGGATCCACCACCTCGTCCACGACGCTTCAGTACCAGTGTCAACTGTGTTTAAAGTGCTTCGCTAGTGTGGCCACCCTAACGGCTCACTTGAGCACACACGAACAAGACTACCGGCACGCAAGCTCCGGCTATAATGGACAACAGCTGGTGGCCTCAGGTGCCGTCATCAAGTCAGAGCCGCAACCCTTCCAATTGCTGTCGCCTCCGATTTACCCAGGATTTCAGGTGGCATCCGGTTCCGGAACTACGACTGGTCAGGCGTGTCAAATTTGTCAGAAGATCTTCAGCACGGGTGACCAGTTCCAGGCCCACATGAAAATCCACGAGAACGAGTTTCGTAACCGGGCTCTGTACCAGGCCGGAAgtgtccagcagcagcagatacAGGTGAAGGAACAAGAGCCGGAAGAGGCTGGCGATGGAAATCCAGTTGACTGCATTATGTGTCATAAGAAGTTTCCAACGGCGGCTTCGTTAGCGATTCATTTGCGTGAGCACAGAGAAGTCAAGAAACCTTACAATTGCTCTGTTTGTGGCAAAGGTTTTATACAGTCAAACAATTTATCGACGCATATGAAAATTCACTCAGGATCTAAACCGTATAAATGTGAAATATGTTTGAAGCAATTTAGCCAATCAAATAATTTGAAGACACACATTCGCACCCATACGAACGAACGTCCATTCGCATGTCCAATTTGCGAAAAAAGATTTAATCAGAAGAACAATCTGACTACACACATGCGAACCCATTCGCTAATCTGCAAGGTCTGCCAGGCCCAGTTCAATCACCCAACAGAACTGACCAAACATGTACGCGTTTGCTACGCAGACCTCAAGCCGAACATTTGTACGGTGTGCAACAAAGTGTTTATAAACAACGAAGAACTAACCGAACACACGAACAAGCAGCACAACCAGGTCAAACCACATCGCTgtcaaatatgtttaaaaaccTTCACCCAGTCCAACAATCTCAAAACGCACATGAAAACTCACATCTTCATGGATCCATTCAAATGTCACTTTTGTTCGAGGTCCTTCCAGAACGAGGAAGAATTCGCTCGCCACTCGCTGGTCCATTCATCGCCAAAACCATTCAGCTGTCCGTATTGCAACAAGCAGTTTATCCAATCCAACAACCTTAAAACACACGTCCGTACGCATACAGGCGAAAAGCCGTACAAATGTTTCGTGTGCGATCGTCTTTTCAACCAGAAAAACAACCTCAACACACACCTACGAATTCATCAGGGACTCAAACCCTACCAGTGCACAATATGCCAGAAGCGGTTCAACCAGTCCAACAATCTCAACAAGCACATTTATAAAGTTCACTGTCACGATAAGATACCCGGAGTTcctcagcagcaacaacagccgCCACCACCGGTCAACGGTCCTATCGATGGACTTGGAACCGTTGCTCAGAGTTGA
Protein Sequence: MLGGKYSEPPEAARNRPNPVVMSMMVPPPPLYPAPSLVTTPTTVVPSTAVRRPPNDSSSAEDGSTTSSTTLQYQCQLCLKCFASVATLTAHLSTHEQDYRHASSGYNGQQLVASGAVIKSEPQPFQLLSPPIYPGFQVASGSGTTTGQACQICQKIFSTGDQFQAHMKIHENEFRNRALYQAGSVQQQQIQVKEQEPEEAGDGNPVDCIMCHKKFPTAASLAIHLREHREVKKPYNCSVCGKGFIQSNNLSTHMKIHSGSKPYKCEICLKQFSQSNNLKTHIRTHTNERPFACPICEKRFNQKNNLTTHMRTHSLICKVCQAQFNHPTELTKHVRVCYADLKPNICTVCNKVFINNEELTEHTNKQHNQVKPHRCQICLKTFTQSNNLKTHMKTHIFMDPFKCHFCSRSFQNEEEFARHSLVHSSPKPFSCPYCNKQFIQSNNLKTHVRTHTGEKPYKCFVCDRLFNQKNNLNTHLRIHQGLKPYQCTICQKRFNQSNNLNKHIYKVHCHDKIPGVPQQQQQPPPPVNGPIDGLGTVAQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00402432;
90% Identity: iTF_00402432;
80% Identity: iTF_00402432;