Cpip012382.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:5651783-5653781[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0076 8.2 7.1 0.0 21 52 233 264 225 265 0.87 2 8 0.0038 4.1 8.1 0.1 23 44 263 284 259 288 0.89 3 8 0.00081 0.87 10.3 0.2 21 45 289 313 285 318 0.89 4 8 0.43 4.6e+02 1.5 0.1 22 48 343 369 323 374 0.78 5 8 0.00017 0.19 12.4 0.2 20 52 370 402 361 403 0.81 6 8 0.0012 1.3 9.7 0.1 21 45 427 451 422 458 0.86 7 8 0.004 4.4 8.0 0.0 21 52 455 486 451 487 0.88 8 8 0.0014 1.6 9.5 0.7 20 48 482 510 479 518 0.82
Sequence Information
- Coding Sequence
- ATGCTTGGTGGTAAATACAGCGAGCCACCGGAGGCCGCCCGAAATCGACCAAATCCTGTGGTAATGTCCATGATGGTGCCACCGCCCCCGCTATATCCAGCACCTTCCTTGGTTACAACCCCGACAACAGTAGTCCCATCCACGGCTGTCCGTCGACCACCGAATGACTCATCATCTGCTGAAGATGGATCCACCACCTCGTCCACGACGCTTCAGTACCAGTGTCAACTGTGTTTAAAGTGCTTCGCTAGTGTGGCCACCCTAACGGCTCACTTGAGCACACACGAACAAGACTACCGGCACGCAAGTTCCGGCTATAATGGACAACAGCTGGTGGCCTCAGGTGCCGTCATCAAGTCAGAGCCGCAACCCTTCCAATTGCTGTCGCCTCCGATTTACCCAGGATTTCAGGTGGCATCCGGTTCCGGAACTACGACTGGTCAGGCGTGTCAAATTTGTCAGAAGATCTTCAGCACGGGTGACCAGTTCCAGGCCCACATGAAAATCCACGAGAACGAGTTTCGTAACCGGGCTCTGTACCAGGCCGGAAgtgtccagcagcagcagcagcagatacaGGTGAAGGAACAAGAGCCGGAAGAGGCTGGCGATGGAAATCCAGTTGACTGCATTATGTGTCATAAGAAGTTTCCAACGGCGGCTTCGTTAGCGATTCATTTGCGTGAGCACAGAGAAGTCAAGAAACCTTACAATTGCTCTGTTTGCGGCAAAGGTTTTATACAGTCAAACAATTTATCGACGCATATGAAAATTCACTCAGGATCTAAACCGTATAAATGTGAAATATGTTTGAAGCAATTTAGCCAATCAAATAATTTGAAGACACACATCCGCACCCATACGAACGAACGTCCATTCGCATGTCCAATTTGCGAAAAAAGATTTAATCAGAAGAACAATCTGACTACACACATGCGAACCCATTCGCTAATCTGCAAGGTCTGCCAGGCCCAGTTCAATCACCCAACAGAACTGACCAAACATGTACGCGTTTGCTACGCAGACCTCAAGCCGAACATTTGTACGGTGTGCAACAAAGTGTTTATAAACAACGAAGAACTAACCGAACACACGAACAAGCAGCACAACCAGGTCAAACCACATCGCtgtcaaatatgtttaaaaacctTCACCCAGTCCAACAATCTCAAAACGCACATGAAAACTCACATCTTCATGGATCCATTCAAATGTCACTTTTGTTCGAGGTCCTTCCAGAACGAGGAAGAATTCGCTCGCCACTCGCTGGTCCATTCATCGCCAAAACCATTCAGCTGTCCGTATTGCAACAAGCAGTTTATCCAATCCAACAACCTTAAAACACACGTCCGTACGCATACAGGCGAAAAGCCGTACAAATGTTTCGTGTGCGATCGTCTTTTCAACCAGAAAAACAACCTCAATACACACCTACGGATTCATCAGGGACTCAAACCCTACCAGTGCACAATATGCCAGAAGCGGTTCAACCAGTCCAACAATCTCAACAAGCACATTTATAAAGTTCACTGTCACGATAAGATACCCGGAGTTCctcagcagcaacaacagccgCCACCACCGGTCAACGGTCCTATCGATGGACTTGGAACCGTTGCTCAGAGTTGA
- Protein Sequence
- MLGGKYSEPPEAARNRPNPVVMSMMVPPPPLYPAPSLVTTPTTVVPSTAVRRPPNDSSSAEDGSTTSSTTLQYQCQLCLKCFASVATLTAHLSTHEQDYRHASSGYNGQQLVASGAVIKSEPQPFQLLSPPIYPGFQVASGSGTTTGQACQICQKIFSTGDQFQAHMKIHENEFRNRALYQAGSVQQQQQQIQVKEQEPEEAGDGNPVDCIMCHKKFPTAASLAIHLREHREVKKPYNCSVCGKGFIQSNNLSTHMKIHSGSKPYKCEICLKQFSQSNNLKTHIRTHTNERPFACPICEKRFNQKNNLTTHMRTHSLICKVCQAQFNHPTELTKHVRVCYADLKPNICTVCNKVFINNEELTEHTNKQHNQVKPHRCQICLKTFTQSNNLKTHMKTHIFMDPFKCHFCSRSFQNEEEFARHSLVHSSPKPFSCPYCNKQFIQSNNLKTHVRTHTGEKPYKCFVCDRLFNQKNNLNTHLRIHQGLKPYQCTICQKRFNQSNNLNKHIYKVHCHDKIPGVPQQQQQPPPPVNGPIDGLGTVAQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402432;
- 90% Identity
- iTF_00402432;
- 80% Identity
- iTF_00400805;