Cpip018432.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- sip1
- Assembly
- GCA_016801865.2
- Location
- NW:129287-134653[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-96 6.6e-92 308.5 11.2 1 275 392 659 392 659 0.99 2 2 0.72 9.3e+03 -3.6 0.0 162 189 672 702 665 707 0.54
Sequence Information
- Coding Sequence
- ATGGCCGCCGAGGAGTACGAGCGGTTCGAGATCACGGACCACGATCTGGAGAGCGAGTTCAACCCGAACCGGCGCAGTCGGCGACCTACGAAGAATCAGCAAATTTACGGCATCTGGGCGGACGACGATTCCGAGAATGAGCTGGAGGAAGGTTCCAGGCGGGGTGGTGGGCGCAGCGGTGGTAAGAAGACGAAGGACTACTCGGCGCCGATTGGGTTTGTGGCCGGCGGGATTCAGCAAGCTGGGAAGAAAAAGGAGGAAAAGAAGGAGAAGAGTGAggacgaggaggaggacgatGAGCGGCCACGGTTTGGGGCGGCGGCGAGGAAGGTCAGCGGGACCAGTTCCGAGTCGGATCAGGAGGAGGTTCGGGATATTCGGTCGATGGCTGGGTTTAGAAAGGCTGGAGGAGGATTTCAGCAGAAGGGTGGCCCGTCTGGGAGGGGAGTTGGCGGTTGGGAGCAGCATACGAGGGGAATCGGTGCCAAGCTGCTGCTCCAGATGGGTTACCAGCCGGGAAAGGGTTTGGGAAAGGACCTGCAAGGTATATCGGCCCCGATTGAGGCTCATCTGAGGAAGGGACGAGGAGCGATTGGCGCTTACGGACCGGAGAAGAAGACGGTCGTGATGGATCAGAAGGCGCCGAAAGAAGCAATTGGGAGCAAGAAGGAGGACCTTAAGGAGTTGACCGAAAGTGGCCAGCAGTGGCGCAAGGACAAGCACAAGGGACGGTACTTTTACAAGAGCGTCGAAGATGTCATCGAGAAGGGCAAACGATCGTACAACTTGTTTGATAAAAACTCCAAAATGAGTCAAGTTAAGGTGATCGACATGACCGGGCCGGAGAGTCGCGTCCTGAGCGGATATCACGCCCTCGGACAGGCCAAGGTCGCGGACGAAGATCTGTACGATGGAAAACCGACGAAGGAAACGAGCAATTTTGCACTGCCCGAGTTGATGCACAATTTGAACTTGATTGTGGACTATTGCGAGCAGGACATCATTGCGATCGACAAGCAGAAGACGACGGCGAAAGATCGCGAGGAGCAGCTGGAGATTGAGAAGGAGAACTTGATCAAAATCACGCAGCTTGAGGAGGACTACATTGCGACGCTGGAAGGTGCCCTCGAGCTCGTGCAAGCCCTCGTCGAACCCGAGGACGGGTTCGTCTCGCTGGAGGAGTGCGAACGCATCTTTGTCCGCATCCAGTCCGAGTTCGCGGCCGAGTACAAAGAGTTTGGCCTTGCCGATCTCGCCCCGGGTGTCGTTGCTCCGATGATCGCGGCCCGGCTCAAAGAGTGGAATCCCTTCGTCGATCCGACGCGCCATCTGGAGTTGTTTAAGCGCTGGCGCACGATCCTCGGTTCGTCTTCCGACTCGGAAAAGCGTAATTTGCTCGATCCGTACTCGGCTCTGGTTTGGTCCGGGGTCATTCCGAGTGTGCGGACTGTGGCGACCACGTGGGATCCGCGCATTCATCAGCCCATGATTGCGCTGTTGGACGCGTGGGCGCCACTGTTGCCGGCGTGGATTTTGGATAACGTCCTGGAGCAGATCATCATGAGCAAGCTGACGGCGGCCGTGACCGAGTGGGATCCGCTGACCGATCACATCCCGATTCACATCTGGATTCAGCCGTGGGCGGGAATTTTGGGGTCGAAAATGGAGGAGTCCATTTATCCGACGATTCGGGAGAAGTTGAGTAAGGCGCTGAAGGCGTGGAATCCGGAGGATCGGTCGGCACGGGCGATGATTACGCCGTGGAAGGGCGTAATGGCGGAGGAGGATCTGCAGGTGTTTCTCACGAAGAACATTATTCCGAAGCTGGAGCTGAGGCTGACGGAGCTGGTGATCAATCCGCTGCAGCAGGACTTGGAAATCTTCAACCAGGTCTGGGAGTGGCACGAACTCATCTCCACCATCCAGATGGCTTCCATCCTGGACAAGTACTTCTTCCCCAAGTGGATCCAAACGCTTGTCTTGTGGTTGAACCAGTCACCCAACTTTGATCAGGTCACCCGCTGGTACCAGGGTTGGAAGTCCCAGCTAACCGACGACATTGTCCGCCAGACCAACATCAAGGAAAACTTCCGCAAAGCCCTGGATCTGATGCAGCGTTCGATCGGCATCACCACCGGAAGctcctccagcagcagcagctcagcGCTTCCGGAACCAATGGACACGATCCCGCCGCCACCGGTGCCACCCTCAATGTCCGCCTCCAAGCCGGTGATGCTGGATTTGGACACGGCGCCGTCGCTAGAGTTCAAGGAGCTGGTGTCGCAAAAGTGTGCCGAGCGGGGAATCATTTTTGCACCGATGCCGGGACGGCGCGAGATGGGCAAGCAGGTCTACCGAGTTGGGAAGCTGTTCTGCTACATCGATCGGTCAGTTTGTATTGTGAGCTTCGATGGAGGCGTCTCGTGGACGCCGGTGTCGCTGCCGGCACTGATTGAGCGGGCTATCAATGGGTAG
- Protein Sequence
- MAAEEYERFEITDHDLESEFNPNRRSRRPTKNQQIYGIWADDDSENELEEGSRRGGGRSGGKKTKDYSAPIGFVAGGIQQAGKKKEEKKEKSEDEEEDDERPRFGAAARKVSGTSSESDQEEVRDIRSMAGFRKAGGGFQQKGGPSGRGVGGWEQHTRGIGAKLLLQMGYQPGKGLGKDLQGISAPIEAHLRKGRGAIGAYGPEKKTVVMDQKAPKEAIGSKKEDLKELTESGQQWRKDKHKGRYFYKSVEDVIEKGKRSYNLFDKNSKMSQVKVIDMTGPESRVLSGYHALGQAKVADEDLYDGKPTKETSNFALPELMHNLNLIVDYCEQDIIAIDKQKTTAKDREEQLEIEKENLIKITQLEEDYIATLEGALELVQALVEPEDGFVSLEECERIFVRIQSEFAAEYKEFGLADLAPGVVAPMIAARLKEWNPFVDPTRHLELFKRWRTILGSSSDSEKRNLLDPYSALVWSGVIPSVRTVATTWDPRIHQPMIALLDAWAPLLPAWILDNVLEQIIMSKLTAAVTEWDPLTDHIPIHIWIQPWAGILGSKMEESIYPTIREKLSKALKAWNPEDRSARAMITPWKGVMAEEDLQVFLTKNIIPKLELRLTELVINPLQQDLEIFNQVWEWHELISTIQMASILDKYFFPKWIQTLVLWLNQSPNFDQVTRWYQGWKSQLTDDIVRQTNIKENFRKALDLMQRSIGITTGSSSSSSSSALPEPMDTIPPPPVPPSMSASKPVMLDLDTAPSLEFKELVSQKCAERGIIFAPMPGRREMGKQVYRVGKLFCYIDRSVCIVSFDGGVSWTPVSLPALIERAING
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948749;
- 90% Identity
- iTF_00401703;
- 80% Identity
- -