Ccup005841.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- su(Hw)
- Assembly
- GCA_958336395.1
- Location
- OY284486.1:40734481-40764415[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1e-05 0.0024 19.9 1.5 3 23 159 180 158 180 0.94 2 13 0.00024 0.027 16.6 0.8 1 23 212 235 212 235 0.96 3 13 0.00012 0.013 17.5 0.8 2 23 242 263 241 263 0.96 4 13 0.00039 0.043 15.9 2.3 1 20 269 288 269 290 0.95 5 13 1e-07 1.1e-05 27.2 1.1 1 23 301 323 301 323 0.98 6 13 6.9e-06 0.00076 21.4 0.6 1 23 333 355 333 355 0.98 7 13 7.4e-06 0.00083 21.3 0.3 1 23 361 383 361 383 0.98 8 13 3.4e-05 0.0038 19.2 0.9 1 23 389 411 389 411 0.99 9 13 5.4e-05 0.006 18.6 2.0 1 23 417 439 417 439 0.94 10 13 0.00027 0.031 16.4 2.2 1 23 445 468 445 468 0.96 11 13 4.4e-06 0.00049 22.0 0.4 2 23 475 496 474 496 0.96 12 13 1.7e-06 0.00019 23.3 3.8 1 23 502 524 502 524 0.98 13 13 1.2e-05 0.0014 20.6 3.1 2 23 531 553 530 553 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCTCTTGAATTAGATACTGAAATTGAAGATGTAAAAACAACAGtcttaaaaaacatgtctataaTTGAATCGGAAGCTGAACACATCTTGGCAAATCATCTTGAGTTAACAGGAAACTCGGatggaaatttgcaaattaatacTATTGAAGACACAATTGTAGAACACATAGGggaACACGACAGTATACAAGATGAAGAAACAGAGGAGGAAGTGGATGATGATACTGCGTTTATTGAAGAAGATGTTCTAACTGACAATAACTCGTTTATTGAGGATGGTACTTTAATAGAAAATGGCACTCTTATTGAGAATAGTGCTCTGATTTCAGATGATACATTAACTGTGGAGAATGTTATGGCTGAAAATGATATTTATATAGAAGATGATACCGCTAATGACCCAGATTATGAAGAGAGCTctaagaaaaagttaaaaatagaaAGGAGGGAGGAAGAATCAAATCCATGCCCTGTTTGTCAACGATCATTTAAAACTTCGGCAagCTTAAAGCGACATGTTACAGTCTGCCATTCCATagtagaagaagaacaagatgaTCCTCTTGCATTTGAGTTGTGTTTGTGTTGTGGAGAACCTGTGGATTCTGCACATACGGCAGGTGACTTTAAGTGTCAACAATGTGATAAGCTTTTTGCTATGCAAAACAGTTTAGAAAGACATAGAAGTATTGAACATTCTGAAGGAGGTATTTGGCAGTGTGCAGAATGTAGTCACTCTTTCACTGAAAGATCTCAGTTGATAGACCACATGCAGTTACACCctcttaataaattatattcttgTCGTCAATGTAATCGTGAATTTACTCGAAAGTATCATTTAGATCGTCATGTATCTCAAACTGGTTGTGATGGAACTCCTCGCAATGAATTTCAGTGTCAGGTTTGTCAAAAAGTATTTTCTCGAAAAGATAATCTGAGGGATCATCTTCGAGCCCATGCAGgacaaattaaaaagaaaaagatattttattgtGAATACTGTAATAAGGAATTTCGAGGTTCTGCTTTACTTTCTGTACACTTGAGAACACATACAGGTGAAAAACCTTATCCTTGTGATTTATGCCCAAAAAGATTTCCTTCCAGTGGTGCAATGAAAAAGCATAGACGTAtgcatacaggagaaaaaccatacCAGTGTCCAAAGtgTACCAACAGATTTGCTGCTAAAGAAACATTGAATAGACATGTGCGTACTCATACAGGCGAAAAGCCACATGCTTGTCAGTTTTGTGGAAAAACATTTATACAAGCTGCCCAATTACGTGCCCACATATTTCATCATACAGGAGAAAATGCTTATACATGTGCGCACTGCAATCGCGCTTTTAACCGCCGCGCTCGTCTTACAATGCATATTAAATTTGTACATGAAGGAGCAAAACCAATGGAATGTGATCAGTGTGATAAAACTTTCTTTCGCAAAGAAGATCTTGCACGTCATATTATGCTGCACTCTGGTCTCAAACCATTTGAATGTGAGATATGTCATAAGTGCTTTGCTGTGAAGTCATCTTTAAAGTTGCATATGTTAACCCACCGAAAGGAACAACCATGTAGTTGCGATGAATGTGGACGTGCATTTATTCGTCAGGACTGTCTCTTACGTCACATGCGTGCTAAGCATCGTGATGTTTTAGAAGATATTTTGGCAGGTGCAGAAAAAAAGAAGCTTCAACAGCAATTATTAAGTGCTGCTTCAGATGCTGCTAAAAATGGAAATCAGAGTTTAACTGAAACCACTATTTGGAATGAACTTACACTAACAGATTCAGTTAAAGAACTCCTTACTTTATTGGTAGATGAAGCAACCTTAGAAGCCTTTGGTTGGCCCGATGCACCTGTCGATAAATTATTGGATTCAGTTATTAGACGATGTGGACATAAACCAGCATCTGAAGAAGATTTTGATTATATTGGTCGAATGCGAGAAAATGCAAAGTTACTTTTTACAGTTGTTATTGATGATGAAGCAGTAAAATCTCTACTTAACAATCAAACAGTCGATGAAGTCATTTTGCATGTCTTAAGattagcaaaatccgaataa
- Protein Sequence
- MEPLELDTEIEDVKTTVLKNMSIIESEAEHILANHLELTGNSDGNLQINTIEDTIVEHIGEHDSIQDEETEEEVDDDTAFIEEDVLTDNNSFIEDGTLIENGTLIENSALISDDTLTVENVMAENDIYIEDDTANDPDYEESSKKKLKIERREEESNPCPVCQRSFKTSASLKRHVTVCHSIVEEEQDDPLAFELCLCCGEPVDSAHTAGDFKCQQCDKLFAMQNSLERHRSIEHSEGGIWQCAECSHSFTERSQLIDHMQLHPLNKLYSCRQCNREFTRKYHLDRHVSQTGCDGTPRNEFQCQVCQKVFSRKDNLRDHLRAHAGQIKKKKIFYCEYCNKEFRGSALLSVHLRTHTGEKPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYQCPKCTNRFAAKETLNRHVRTHTGEKPHACQFCGKTFIQAAQLRAHIFHHTGENAYTCAHCNRAFNRRARLTMHIKFVHEGAKPMECDQCDKTFFRKEDLARHIMLHSGLKPFECEICHKCFAVKSSLKLHMLTHRKEQPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDILAGAEKKKLQQQLLSAASDAAKNGNQSLTETTIWNELTLTDSVKELLTLLVDEATLEAFGWPDAPVDKLLDSVIRRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLRLAKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00789541; iTF_01345863; iTF_00838809;
- 90% Identity
- -
- 80% Identity
- -