Basic Information

Insect: Sinelater perroti
Gene Symbol: su(Hw)
Assembly: GCA_036346155.1
Location: JARFIY010000299.1:3389096-3400777[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.1e-05 0.0061 19.2 1.9 3 23 168 189 167 189 0.95

2 13 8.9e-05 0.026 17.2 0.5 1 23 220 243 220 243 0.96

3 13 0.00015 0.043 16.5 0.3 2 23 250 271 249 271 0.97

4 13 0.00011 0.033 16.9 2.4 1 20 277 296 277 298 0.95

5 13 6.3e-08 1.8e-05 27.1 1.1 1 23 309 331 309 331 0.98

6 13 1.2e-06 0.00033 23.2 0.3 1 23 341 363 341 363 0.98

7 13 4.6e-06 0.0013 21.3 0.3 1 23 369 391 369 391 0.98

8 13 7.9e-06 0.0023 20.5 0.9 1 23 397 419 397 419 0.99

9 13 8.3e-05 0.024 17.3 2.3 1 23 425 447 425 447 0.94

10 13 9.6e-05 0.027 17.1 2.9 1 23 453 476 453 476 0.96

11 13 4.1e-06 0.0012 21.4 0.4 2 23 483 504 482 504 0.96

12 13 1.1e-06 0.0003 23.3 3.8 1 23 510 532 510 532 0.98

13 13 7.6e-06 0.0022 20.6 3.1 2 23 539 561 538 561 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.1e-05	0.0061	19.2	1.9	3	23	168	189	167	189	0.95
2	13	8.9e-05	0.026	17.2	0.5	1	23	220	243	220	243	0.96
3	13	0.00015	0.043	16.5	0.3	2	23	250	271	249	271	0.97
4	13	0.00011	0.033	16.9	2.4	1	20	277	296	277	298	0.95
5	13	6.3e-08	1.8e-05	27.1	1.1	1	23	309	331	309	331	0.98
6	13	1.2e-06	0.00033	23.2	0.3	1	23	341	363	341	363	0.98
7	13	4.6e-06	0.0013	21.3	0.3	1	23	369	391	369	391	0.98
8	13	7.9e-06	0.0023	20.5	0.9	1	23	397	419	397	419	0.99
9	13	8.3e-05	0.024	17.3	2.3	1	23	425	447	425	447	0.94
10	13	9.6e-05	0.027	17.1	2.9	1	23	453	476	453	476	0.96
11	13	4.1e-06	0.0012	21.4	0.4	2	23	483	504	482	504	0.96
12	13	1.1e-06	0.0003	23.3	3.8	1	23	510	532	510	532	0.98
13	13	7.6e-06	0.0022	20.6	3.1	2	23	539	561	538	561	0.94

Sequence Information

Coding Sequence: ATGGAGGAAGACGAAAGCGCATGCCAAGCAATTAACAAAGCGGAGCCCATAGAAATGGATGTTCAAACCGTGGACGTTAAGACGACTGTGCTAAAGAACATGGTGCTGATTGGCACTGATGGGGAGACGCACAGCATTCTAGCCAACCACATCGAACTAATCAGCAACTCGGATGGCGACTTAGAGATCAACACTATCCAACATATTGAAAATGCCATAGTAGAAGAAATTGAGGACCACACTATACACCCTGAAGATCTAGAGGACTCTGAAGACGTGTTCATCGAAGAGAACATTCTAAGGGAAACCCATCACACCATTACGGAAGATGGTACTATTATTGAGAATGGCAGTGTTATTACTGATGAAGGCATGATCATGGACGATATTCCTGAAGAGGACGATCCTTATGATGAAGACACTGATGCTGACGATCCAGATTATGAAGTCAAACCTGCCAGGAAACTGAAAgtggaaattaaagaagaagatgtAAATCCTTGTACTCTTTGCCAACGTACTTTTAAGACTCCTGCGagTTTAAAGAGACACATCACGGTTTGCCATAGCGTAGAAGAGGAACAAGAAGATCCACTAGCTTTTGAGTTGTGCTTGTGTTGTGGAGAGCCCATTGATTCAGCCCACACGACAGGCGATTTTAAGTGTGACCAGTGCGACAAGCTCTTTGTTGTGCAAAACAGTTTGGAGAGGCACCGCAGCATTGAACACGCGCAAGGCGGCGTCTGGCAATGCGTAGAGTGCACCAACTCATTCACAGAGAGATCTCAGCTGGTCGAGCACATGCAAATGCATCCCCTCAACAAGTCCTACTCTTGTCGGCAGTGCAATCGCGAGTTCACTCGCAAGTATCACTTGGACCGCCACATCACTCAGACTGGCTGCGATGGAACACCACGGAACGAATTTCAGTGCCAGGTGTGCCAGAAAGTATTCTCCCGAAAAGATAATCTGAGGGACCATCTTAGAGCACATGCGGGACAagctaaaaagaagaaaatattttcgtGCGAGTATTGCGGCAAGGAATTCCGGGGTTCTGCTTTGCTGTCTGTTCATTTAAGAACACATACAGGAGAAAGACCATATCCGTGCGACTTATGCCCAAAACGTTTTCCATCTAGTGGAGCAATGAAAAAACATAGGCGGATGCACACGGGAGAAAAGCCATATCAATGTCCCAAAtgcAACAACAGATTTGCAGCTAAAGAGACTCTTAATAGACACGTGCGGACTCATACAGGCGAAAAACCGCACGCGTGTCAGTTTTGCGGAAAGAAATTTATACAAGCTGCGCAGTTACGTGCACACATCTTCCATCACACTGGAGAGAACGCCTACACTTGCAGTCACTGCAATCGCGCGTTTAACCGCCGCGCCCGACTGACGATGCACATCAAGTTTGTTCATGAAGGCGCGAAACCCATGGAATGTGAACAGTGTGACAAGACTTTCTTCCGCAAAGAGGATCTTGCAAGGCACATCTTACTGCATTCGGGACTTAAACcatttgaATGTGAAATCTGCCATAAATGCTTTGCTGTGAAGTCTTCCTTGAAGTTGCACATGCTCACCCACCGAAAAGAACAGCCGTGCAGCTGTGACGAGTGTGGACGCGCGTTTATCCGACAAGACTGCCTTTTACGCCATATGCGTGCGAAACATCGCGACGTCTTGGAGGACATTTTGGCTGGAGCggagaagaagaaattgcaGCAGCAGCTGCTGAATGCCGCTTCAGATGCAGCTAAAAACGGGAGCAAAAACTTGTCGGAAAACACGATTTGGAACGAACTCACTTTGACGGACTCGGTTAAGGAGCTTCTGACCTTGTTAGTGGATGAAGCTACTTTGGAGGCCTTTGGCTGGCCCGATGCCCCAGTCGACAAGTTACTAGACTCTGTGATCAGGAGGTGCGGTCACAAGCCAGCATCTGAGGAGGATTTCGACTATATCGGCCGAATGAGGGAAAATGCCAAGCTGCTGTTCACTGTGGTCATTGACGATGAGGCAGTGAAATCACTTCTCAACAATCAGACTGTCGACGAGGTCATTCTGCATGTCTTAAAGTTAGCGAAGTCTGAGTGA
Protein Sequence: MEEDESACQAINKAEPIEMDVQTVDVKTTVLKNMVLIGTDGETHSILANHIELISNSDGDLEINTIQHIENAIVEEIEDHTIHPEDLEDSEDVFIEENILRETHHTITEDGTIIENGSVITDEGMIMDDIPEEDDPYDEDTDADDPDYEVKPARKLKVEIKEEDVNPCTLCQRTFKTPASLKRHITVCHSVEEEQEDPLAFELCLCCGEPIDSAHTTGDFKCDQCDKLFVVQNSLERHRSIEHAQGGVWQCVECTNSFTERSQLVEHMQMHPLNKSYSCRQCNREFTRKYHLDRHITQTGCDGTPRNEFQCQVCQKVFSRKDNLRDHLRAHAGQAKKKKIFSCEYCGKEFRGSALLSVHLRTHTGERPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYQCPKCNNRFAAKETLNRHVRTHTGEKPHACQFCGKKFIQAAQLRAHIFHHTGENAYTCSHCNRAFNRRARLTMHIKFVHEGAKPMECEQCDKTFFRKEDLARHILLHSGLKPFECEICHKCFAVKSSLKLHMLTHRKEQPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDILAGAEKKKLQQQLLNAASDAAKNGSKNLSENTIWNELTLTDSVKELLTLLVDEATLEAFGWPDAPVDKLLDSVIRRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLKLAKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00399740;
90% Identity: -
80% Identity: -