Hnig005021.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963082805.1
- Location
- OY720160.1:7714167-7718181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3e-05 0.0043 18.5 1.5 3 23 196 217 195 217 0.94 2 13 0.0011 0.11 14.1 0.5 1 23 248 271 248 271 0.96 3 13 7.6e-05 0.0075 17.8 0.2 2 23 278 299 277 299 0.96 4 13 0.00013 0.013 17.0 2.4 1 20 305 324 305 326 0.95 5 13 8.4e-08 8.3e-06 27.1 1.1 1 23 337 359 337 359 0.98 6 13 1e-05 0.001 20.5 0.9 1 23 369 391 369 391 0.98 7 13 6.1e-06 0.0006 21.2 0.3 1 23 397 419 397 419 0.98 8 13 2.7e-05 0.0027 19.2 0.9 1 23 425 447 425 447 0.99 9 13 4.4e-05 0.0044 18.5 2.0 1 23 453 475 453 475 0.94 10 13 0.00022 0.022 16.3 2.2 1 23 481 504 481 504 0.96 11 13 3.6e-06 0.00036 21.9 0.4 2 23 511 532 510 532 0.96 12 13 5.2e-06 0.00052 21.4 4.2 1 23 538 560 538 560 0.98 13 13 1e-05 0.001 20.5 3.1 2 23 567 589 566 589 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAAGAAGAAAACGCATGTCAAGTGATCAATAAAATGGAACCTCCAGAGATAGATGCTGTAGCTGAAGATGTGAAAACAACAGTTTTACGAAATATGACTATAATTGAAATGGACGCTAACCACATCTTAGGAAGTCATCTTGAATTATCTGGAAACTCTGATGGAAATTTACTAATCAACACTATTGAAGAAGCAGTTGTAGAACAGATTGAGTATGTCATAATAATAATCTGTATTCATTATAGATTCATGTTTGCAAATATACAgGAGCCTGATGATAATGTAGAACATGAAGAACATGATGAAGAAATGGAAGAAGAGATTGATGATAATTCTACTTTCATTGAAGAAGGTGTTCTCGTTCAAAATGATGTATTTATTGAGAATAGTGATTTGATTGAAAATGATTCTCTTATTGAGGACAGTTCTTTGATCCCAGATGATACACTAACAGTAGAGAATGTTATGGAAGAaaatgtagatatgtatgtagaAGATGATACTGTTAATGATCCAGATTATGAAGTGAACtctaagaaaaaattgaaaatagaaagGAGGGATGAAGAATCAAATCCATGTCCTATTTGCCAGAGATCGTTTAAAACTACAGCAagtttaaAGCGACATGTGACAGTTTGCCATTCCGTAGAAGAAGAACAAGATGATCCTTTAGCATTTGAATTATGCTTATGTTGTGGAGAACCTGTGGATTCCGCGCATAcgtcgGGTGAATTCAAGTGTCCACAATGTGATAAGTTGTTTATGATCCAAAACAATTTAGACAGACATCGAAGTATTGAACATCCTGAAGGAGGTGTTTGGCAATGTGCAGAATGTAGTCAGTCTTTCTCTGAAAGATCTCAGTTGGTAGACCACATGCAGTTACATCctcttaataaattatattcatGCCGCCAGTGTAATCGTGAATTTACCCGCAAGTATCATTTGGATCGTCATATTTCTCAAACTGGTTGTGATGGAACCCCTCGCAATGAATTTCAATGTCAGGTTTGTCAAAAAGTATTCTCTCGAAAAGACAATCTGAGGGATCATCTTCGAGCTCATGCAGGAcaagttaaaaagaaaaaattattttattgtgaaTACTGTAAGAAGGAATTTCGAGGTTCTGCTTTACTTTCTGTACACTTGCGAACACATACAGGTGAAAAACCTTATCCTTGTGATTTATGCCCAAAAAGATTTCCTTCTAGTGGGGCAATGAAAAAGCATAGACGCATgcatacaggagaaaaaccaTATCAATGTCCAAAGtGTACCAACAGATTTGCTGCTAAAGAAACCTTGAATAGGCATGTGCGTACTCACACAGGGGAGAAACCACATGCCTGTCAATTTTGTGGAAAAACTTTTATACAAGCTGCCCAATTACGTGCTCACATATTTCATCATACAGGGGAAAATGCTTATACATGTGCACATTGCAATCGAGCTTTTAACCGTCGTGCTCGTCTTACAATGCATATTAAGTTTGTACATGAAGGAGCAAAACCGATGGAATGTGATCAATGTGATAAAACTTTCTTTCGAAAAGAAGATCTTGCACGTCATATTATGCTACACTCGGGACTCAAACCATTTGAATGTGAACTATGTCATAAGTGCTTTGCTGTGAAATCATCTTTAAAATTGCATATGTTAACCCACCGGAAGGAACAACCATGTAGTTGTGATGAATGTGGACGTGCATTTATACGTCAGGACTGTCTCTTGCGACATATGCGTGCAAAGCATCGCGATGTTTTGGAAGATATTTTGGCTGGTGCAGAGAAAAAGAAGCTTCAACAGCAACTATTAAGTGCTGCTTCAGATGCTGCTAAAAATGGAACTAAGAATTTAACTGATACCACTATTTGGAATGAACTGACATTAACAGATTCGGTTAAAGAATTGCTTACTTTGCTAGTGGATGAGGCTACCTTAGAAGCATTTGGTTGGCCTGACGCACCTGTTGATAAATTATTAGATTCTGTTATTAGACGATGTGGACATAAACCAGCATCTGAAGAAGATTTTGATTATATCGGTCGAATGCGAGAAAATGCAAAGTTACTTTTTACTGTTGTTATTGATGATGAGGCAGTAAAATCTCTCCTTAACAACCAAACTGTCGATGAAGTCATTTTACATGTCTTAAGATTAGCCAAATCCGAATAA
- Protein Sequence
- MEEEENACQVINKMEPPEIDAVAEDVKTTVLRNMTIIEMDANHILGSHLELSGNSDGNLLINTIEEAVVEQIEYVIIIICIHYRFMFANIQEPDDNVEHEEHDEEMEEEIDDNSTFIEEGVLVQNDVFIENSDLIENDSLIEDSSLIPDDTLTVENVMEENVDMYVEDDTVNDPDYEVNSKKKLKIERRDEESNPCPICQRSFKTTASLKRHVTVCHSVEEEQDDPLAFELCLCCGEPVDSAHTSGEFKCPQCDKLFMIQNNLDRHRSIEHPEGGVWQCAECSQSFSERSQLVDHMQLHPLNKLYSCRQCNREFTRKYHLDRHISQTGCDGTPRNEFQCQVCQKVFSRKDNLRDHLRAHAGQVKKKKLFYCEYCKKEFRGSALLSVHLRTHTGEKPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYQCPKCTNRFAAKETLNRHVRTHTGEKPHACQFCGKTFIQAAQLRAHIFHHTGENAYTCAHCNRAFNRRARLTMHIKFVHEGAKPMECDQCDKTFFRKEDLARHIMLHSGLKPFECELCHKCFAVKSSLKLHMLTHRKEQPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDILAGAEKKKLQQQLLSAASDAAKNGTKNLTDTTIWNELTLTDSVKELLTLLVDEATLEAFGWPDAPVDKLLDSVIRRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLRLAKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00399740;
- 90% Identity
- -
- 80% Identity
- -