Ccup035920.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- bab1
- Assembly
- GCA_958336395.1
- Location
- OY284492.1:4082360-4085393[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-16 3.5e-14 53.9 0.0 1 43 28 71 28 73 0.95
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGTTGGAGTACCAACCAGAGTCTTGTACACAACCTGCGATTCCGAGAACGAGGACCTTTAAAATCTTGGCGACCAGAAACAATGGCTgaagcaattttttctgttctTAAGGAAGGCCTATCTCTTTCACAAGCTGCTAGGAAATATGATATTCCTTATCCGACATTTGTTCTCTACGCCAACCGAGTACATAACATGTTGGGACCTTCTGCTGATGGAGGCTCAGATCTAAGACCCAAAGGTCGGGGTCGACCACAGAGAATTCTATTGGGAGTCTGGCCTGATGAACACATCAAAGGAGTCATACGTGCAGTGGTGTTCCGAGATTCTCATCATATTAAAGAAGAACCCGTGCTTTCCTATCAGAGAATGCAtGACGGTGTGGGATTACCACCAAACTATCCAAACAGCTCCTGCAGTAACGGTTCAGAACCAACAGTTTCACCTGgtgcagcagcagcagcagctgTAGCTGCAGTAGCTCAAGGTTTAAGGCAGCAAATGTGCAATATGATGGCTGCGGCACAACAACAGAATTCAACTTCACATGACTCAAACCTCGTCAATTCCCTCACATTAGCCGGTCATTGTGGTACCACAACTGTACCAAGCAATGGCACTGCACCCATGAGCATGAGTATGAGCAACATTTCATCCATGCGTTTAGGAAGTCCGGCTGGAAGTGTGCAAGACTTGCGAATAAGTCCAGCAGGTTCAGGCCTAGAAAGTCCTCTATCTTCTCCTCTTGGACTGACGATGTCCAATGCAATGGAAGCTACGGCACTTAATTTAGGCATGGGAAACAATGTCGATGTTTCTGGTATTGGAGTATCCGGAATGACATACAAACCTGCAAGACCGTTCACATCACCTAGAGCTGAAAATCTCTTCCAAGAAGACATAGATGAATTGGTGAAACCCATGCACACGTCAACTCCCCGATCAAAAGACACAATGGCTTCCATTAAAATGGAACCGTTAACAGAGTGTCGTGGTGAATGA
- Protein Sequence
- MWQKCWSTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIKGVIRAVVFRDSHHIKEEPVLSYQRMHDGVGLPPNYPNSSCSNGSEPTVSPGAAAAAAVAAVAQGLRQQMCNMMAAAQQQNSTSHDSNLVNSLTLAGHCGTTTVPSNGTAPMSMSMSNISSMRLGSPAGSVQDLRISPAGSGLESPLSSPLGLTMSNAMEATALNLGMGNNVDVSGIGVSGMTYKPARPFTSPRAENLFQEDIDELVKPMHTSTPRSKDTMASIKMEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210114;
- 90% Identity
- iTF_01294883; iTF_00151748; iTF_00152168; iTF_01284182; iTF_00838322; iTF_00950644; iTF_00788447; iTF_00949728; iTF_01293534; iTF_00269682; iTF_00272403; iTF_00268084; iTF_00270996; iTF_00927450; iTF_01345600;
- 80% Identity
- -