Lyun019238.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- bab1
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000042.1:993445-1007220[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-17 2.7e-14 53.8 0.0 1 43 40 83 40 85 0.95 2 2 9.2 2.8e+03 -0.7 0.4 6 15 170 179 169 183 0.88
Sequence Information
- Coding Sequence
- ATGAAAATAGatAGTTACCAGTATCAACTACAGTCCATGTGGCAGAAATGTTGGAGTACGAACCAAAGCCTTGTACACAATTTAAGATTTAGAGAGAGAGGACCTTTGAAATCGTGGCGACCAGAAACTATGGCAGAAGCAATTTTTTCCGTTTTAAAAGAGGGTTTATCATTATCTCAAGCGGCAAGAAAATATGATATTCCTTATCCGACCTTCGTTCTTTACGCAAATCGAGTACACAATATGTTAGGACCTTCTGCCGATGGTGGTTCGGatttaaggCCAAAAGGAAGAGGGAGACCTCAAAGGATATTATTGGGAGTATGGCCAGATGATCACATAAAAGGAGTAATACGTGCGGTAGTTTTCCGAGATTCTCATCATATTAAGGACGAACCTGTGCTGGCTTATCCAAGAATGCAcGACGGTGTCGGTTTACCGCCAAATTATCCAAATAGTACTTGTAGTAATGGATCCGAGTCTACGGTGTCTCCGAGCATGGCCACTGCTGCGGCAGTGGCGGCTGTTGCGCAAGGATTACGACAGCAAATGTGCAATATGATGGCGGCAGCGCAACAACAAAATACTGCGCACGATACTGCGTTAGTTAATTCGTTATCGTTAGCAAGTCATTGTGGTACGGCTAGCATGCCGAGTAACGGAACCACACCGATGAGTATGAGTATGAGCAATCTTGCGTCGATGAGATTGGGAAGTCCGGCGGGTAGCGTGCAAGATTTAAGAATAAGTCCGGCGGGATCGGGATTAGAGAGTCCATTATCGTCGCCATTAGAATTAACAAATGTGATGGAAACGACGGGGCTTAATTTAGGTATGGGCAATAACGTAGACGTAGCCGGTATTGGAGTATCGGGCATGACTTATAAACCTGCAAGGCCTTTTACTTCGCCTAGAGCAGAAAATCTCTTCCAAGAGGACATAGAAGAATTGGTAAAGCCAATGCACACAACAAATTCAAGATCAAAGGACACAATGGCTTCCATAAAAATGGAACCATTGACAGAGTGTCGTGGTGAATGA
- Protein Sequence
- MKIDSYQYQLQSMWQKCWSTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDDHIKGVIRAVVFRDSHHIKDEPVLAYPRMHDGVGLPPNYPNSTCSNGSESTVSPSMATAAAVAAVAQGLRQQMCNMMAAAQQQNTAHDTALVNSLSLASHCGTASMPSNGTTPMSMSMSNLASMRLGSPAGSVQDLRISPAGSGLESPLSSPLELTNVMETTGLNLGMGNNVDVAGIGVSGMTYKPARPFTSPRAENLFQEDIEELVKPMHTTNSRSKDTMASIKMEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210114;
- 90% Identity
- iTF_00398774;
- 80% Identity
- iTF_00269682;