Cpri018557.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4356124-4358155[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.53 3.2e+02 1.7 0.1 26 46 123 143 108 146 0.88 2 8 0.00038 0.23 11.8 0.0 21 44 146 169 143 176 0.90 3 8 0.69 4.1e+02 1.4 0.1 22 52 175 205 169 207 0.82 4 8 2.3 1.4e+03 -0.3 0.0 22 47 203 228 200 233 0.84 5 8 0.044 26 5.2 0.0 21 50 230 259 217 263 0.81 6 8 2.5 1.5e+03 -0.4 0.0 22 44 259 281 256 283 0.88 7 8 0.0018 1.1 9.6 0.0 12 44 276 309 272 313 0.84 8 8 0.00035 0.21 11.9 0.0 21 45 314 338 310 344 0.91
Sequence Information
- Coding Sequence
- ATGAGCAGGGCAGTAGTAGGTACTTGTAATTGGTGCTTGCAGGGGGCGCCGGTGGAGAGGATCGAGGAGGggttatggcgcttctggaaagTGATTAGTGCAGAGGTGAGTGGCCCTCATGGCATATTTGCAGGGGATCCTGTCGTATCCCACAGGGATATCTGCGAGATATGCAACTCGCGCTGCCGGGACTTTTCGATGTACATCGAGCGGCGCAAGACCCACTCGTCCGTAATAGACGGGATACTACCCGGCAGGCGCATCAAGGACGAACCTACCATCGACGTCGAGTATGACCGTCTCGTAATTAAGGAGGAGGGACGGTCGAACGACGAGCCGACGGAGCCCGAAGGGAAGGCGTCGCTCGAGTGCCCGCACTGCAGTAAGTCTTTTACGTACCCTAGTTCGTTAAGGAAGCACTTGCGCTTACATACGGGCGAGAGGCCCTTCGAGTGCCCCGTCTGCGGCAAGGCCTTCGCCGAGAGCAGCAATCTAAAGAGGCACTCGCGCATCCATACAGGCGAGAAACGTTTCCGCTGTCCGACCTGCGGTAAGACCTTCGCCGAGGCGGTCCATTTGAGGAACCACGCGCGACTCCACACCGGCGAGAAGCCGTTCGAGTGCTCGGACTGCGGTAAAACGTTCACCCAGGCCGGCAGTTTGAAGTCGCACGTGCGCgtccacacgggcgagaagcctttcGGGTGTCCGCGTtgcgataagacttttaccGCGTCGAGCACCCTCAAGACGCACATGCGCGTGCACACGGGCGAGAAACCGTTCGAGTGTTCGTTTTGCGGTAAGACTTTCGCCGAGTCTAGTACGATGAAGACGCACCTGCGGTCgcatacgggcgagaagccttACGGGTGTTCCCTGTGCGATAAGTCCTTTACCCAGTCGAGGGTGTTGAAGAACCACATGTGCTCGCATACCGGCGAGAGGCCTTTCGGGTGCCCGGTGTGCGGTAAGACTTTTGCTAAGTCGAGCGACTTGAAGAGGCACTTGTGCGTCCATACGGGCGAGAGGCGTTTCAAATGTACCGTTTGCGTATCAGCGACCAGCCCGTCCGTGCTCGTCGTGGGTTTGTTCGCCCTAACGTCTCGGGTCGTAGTTGATTCCTATGATGAGAAGGGTCCGTCGCCGGCGGAGCTCCATACATGGGTGTCGCCCAGGGTGTTAGAGTACGTTCTGGTTGGGCCATGTCGTGATATCTGCCCGGATCCGGGACACATGTGCCTTGTACTGAGCCCTTCTGTGATCCCTAAAGTCTCCAGTTCTTTCAAATAG
- Protein Sequence
- MSRAVVGTCNWCLQGAPVERIEEGLWRFWKVISAEVSGPHGIFAGDPVVSHRDICEICNSRCRDFSMYIERRKTHSSVIDGILPGRRIKDEPTIDVEYDRLVIKEEGRSNDEPTEPEGKASLECPHCSKSFTYPSSLRKHLRLHTGERPFECPVCGKAFAESSNLKRHSRIHTGEKRFRCPTCGKTFAEAVHLRNHARLHTGEKPFECSDCGKTFTQAGSLKSHVRVHTGEKPFGCPRCDKTFTASSTLKTHMRVHTGEKPFECSFCGKTFAESSTMKTHLRSHTGEKPYGCSLCDKSFTQSRVLKNHMCSHTGERPFGCPVCGKTFAKSSDLKRHLCVHTGERRFKCTVCVSATSPSVLVVGLFALTSRVVVDSYDEKGPSPAELHTWVSPRVLEYVLVGPCRDICPDPGHMCLVLSPSVIPKVSSSFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392898;
- 90% Identity
- iTF_00392966; iTF_00392898; iTF_00393243; iTF_00392925;
- 80% Identity
- iTF_00392966;