Cpri018562.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4363072-4364559[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0063 5.8 7.2 0.2 16 40 121 142 114 148 0.87 2 11 0.005 4.7 7.5 0.0 18 38 151 168 144 170 0.91 3 11 0.01 9.7 6.5 0.8 1 27 163 188 163 196 0.89 4 11 0.17 1.6e+02 2.6 0.3 6 29 196 218 192 229 0.74 5 11 0.023 21 5.4 0.4 14 40 231 254 220 257 0.77 6 11 4.7e-05 0.044 14.0 0.3 17 41 262 283 255 284 0.88 7 11 0.99 9.2e+02 0.2 0.5 19 39 292 309 287 316 0.79 8 11 0.015 14 6.0 0.9 19 39 320 337 305 346 0.87 9 11 0.064 60 4.0 1.1 16 40 345 366 339 369 0.80 10 11 0.0027 2.5 8.4 3.3 4 40 362 394 359 397 0.84 11 11 0.00014 0.13 12.5 1.5 2 41 388 423 387 425 0.88
Sequence Information
- Coding Sequence
- ATGAGCAGGGCAGTAGTAGGTACTTGTAATTGGTGCTTGCAGGGGGCGCCGGTGGAGAGGATCGAGGAGGggttatggcgcttctggaaagTGATTAGTGCAGAGGTGAGTGGCCCTCATGGCATATTTGCAGGGGATCCTGTCGTATCCCACAGGGATATCTGCGAGATATGCAACTCGCGCTGCCGGGACTTTTCGATGTACATCGAGCGGTGCAAGACCCACTCGTCCGTAATAGACGGGATACTACCCGGCAGGCGCATCAAGGACGGACCTACCATCGACGTCGAGTACGACCGTCTCGTAATTAAGGAGGAGGAACGGTCGAACGACGAGCCGACGGAGCCCGAAGGGAAGGCGTCGCTCGAGTGCCCGCACTGCAGTAAGTCTTTTACGTACCCTAGTTCGTTAAGGAAGCACTTGCGCTTACATACGGGCGAGAGGCCCTTCGAGTGCCCCGTCTGCGGCAAGGCCTTCGCCGAGAGCAGCAATCTAAAGAGGCACTCGCGCATCCATACAGGCGAGAAACGTTTCCGCTGTCCGACCTGCGGTAAGACCTTCGCCGAGGCGGTCCATTTGAGGAACCACGCGCGACTCCACACCGGCGAGAAGCCGTTCGAGTGCTCGGACTGCGGTAAAACGTTCACCCAGGCCGGCAGTTTGAAGTCGCACGTGCGCgtccacacgggcgagaagcctttcGGGTGTCCGCGTtgcgataagacttttaccGCGTCGAGCACCCTCAAGACGCACATGCGCGTGCACACGGGCGAGAAACCGTTCGAGTGTTCGTTTTGCGGTAAGACTTTCGCCGAGTCTAGTACGATGAAGACGCACCTGCGGTCgcatacgggcgagaagccttACGGGTGTTCCCTGTGCGATAAGTCCTTTACCCAGTCGAGGGTGTTGAAGAACCACATGTGCTCGCATACCGGCGAGAGGCCTTTCGGGTGCCCGGTGTGCGGTAAGACTTTTGCTAAGTCGAGCGACTTGAAGAGGCACTTGTGCGTCCATACGGGCGAGAGGCGTTTCAAATGTACCGTTTGCGGTAAGACTTTTATCGAGTCTGGCgttttgaaaaggcacatgcgcttCCATACGGGTGaaagaccttttaaatgttcgtaTTGCGATAGGATTTTTAGTCACTCTAGTAACTTGAATAAGCACGTGCGACtccatacgggcgagaagccttATAAGTGCTCGCTGTGCGATAAGGCCTTTACTCAGTCGAGTACTCTTAAGGCGCACTTGCGCACTCACCCAAGCGACGATCCTCTTTAA
- Protein Sequence
- MSRAVVGTCNWCLQGAPVERIEEGLWRFWKVISAEVSGPHGIFAGDPVVSHRDICEICNSRCRDFSMYIERCKTHSSVIDGILPGRRIKDGPTIDVEYDRLVIKEEERSNDEPTEPEGKASLECPHCSKSFTYPSSLRKHLRLHTGERPFECPVCGKAFAESSNLKRHSRIHTGEKRFRCPTCGKTFAEAVHLRNHARLHTGEKPFECSDCGKTFTQAGSLKSHVRVHTGEKPFGCPRCDKTFTASSTLKTHMRVHTGEKPFECSFCGKTFAESSTMKTHLRSHTGEKPYGCSLCDKSFTQSRVLKNHMCSHTGERPFGCPVCGKTFAKSSDLKRHLCVHTGERRFKCTVCGKTFIESGVLKRHMRFHTGERPFKCSYCDRIFSHSSNLNKHVRLHTGEKPYKCSLCDKAFTQSSTLKAHLRTHPSDDPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392966; iTF_00393243; iTF_00392925; iTF_00393247;
- 90% Identity
- iTF_00393247;
- 80% Identity
- iTF_00393243; iTF_00392925;