Cpri018562.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4363072-4364559[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.57 3.4e+02 1.6 0.1 26 46 123 143 113 146 0.88 2 10 0.00039 0.24 11.8 0.1 22 45 147 170 144 177 0.90 3 10 0.71 4.3e+02 1.3 0.1 22 52 175 205 169 206 0.82 4 10 0.044 26 5.2 0.0 21 50 230 259 217 263 0.81 5 10 1.8 1.1e+03 0.0 0.0 21 44 258 281 254 285 0.88 6 10 0.0018 1.1 9.7 0.0 12 44 276 309 272 314 0.85 7 10 0.00035 0.21 11.9 0.0 21 45 314 338 310 344 0.91 8 10 2 1.2e+03 -0.1 0.0 25 45 346 366 341 369 0.84 9 10 0.0062 3.7 7.9 0.1 21 52 370 401 359 401 0.87 10 10 0.025 15 6.0 0.0 21 45 398 422 396 426 0.92
Sequence Information
- Coding Sequence
- ATGAGCAGGGCAGTAGTAGGTACTTGTAATTGGTGCTTGCAGGGGGCGCCGGTGGAGAGGATCGAGGAGGggttatggcgcttctggaaagTGATTAGTGCAGAGGTGAGTGGCCCTCATGGCATATTTGCAGGGGATCCTGTCGTATCCCACAGGGATATCTGCGAGATATGCAACTCGCGCTGCCGGGACTTTTCGATGTACATCGAGCGGTGCAAGACCCACTCGTCCGTAATAGACGGGATACTACCCGGCAGGCGCATCAAGGACGGACCTACCATCGACGTCGAGTACGACCGTCTCGTAATTAAGGAGGAGGAACGGTCGAACGACGAGCCGACGGAGCCCGAAGGGAAGGCGTCGCTCGAGTGCCCGCACTGCAGTAAGTCTTTTACGTACCCTAGTTCGTTAAGGAAGCACTTGCGCTTACATACGGGCGAGAGGCCCTTCGAGTGCCCCGTCTGCGGCAAGGCCTTCGCCGAGAGCAGCAATCTAAAGAGGCACTCGCGCATCCATACAGGCGAGAAACGTTTCCGCTGTCCGACCTGCGGTAAGACCTTCGCCGAGGCGGTCCATTTGAGGAACCACGCGCGACTCCACACCGGCGAGAAGCCGTTCGAGTGCTCGGACTGCGGTAAAACGTTCACCCAGGCCGGCAGTTTGAAGTCGCACGTGCGCgtccacacgggcgagaagcctttcGGGTGTCCGCGTtgcgataagacttttaccGCGTCGAGCACCCTCAAGACGCACATGCGCGTGCACACGGGCGAGAAACCGTTCGAGTGTTCGTTTTGCGGTAAGACTTTCGCCGAGTCTAGTACGATGAAGACGCACCTGCGGTCgcatacgggcgagaagccttACGGGTGTTCCCTGTGCGATAAGTCCTTTACCCAGTCGAGGGTGTTGAAGAACCACATGTGCTCGCATACCGGCGAGAGGCCTTTCGGGTGCCCGGTGTGCGGTAAGACTTTTGCTAAGTCGAGCGACTTGAAGAGGCACTTGTGCGTCCATACGGGCGAGAGGCGTTTCAAATGTACCGTTTGCGGTAAGACTTTTATCGAGTCTGGCgttttgaaaaggcacatgcgcttCCATACGGGTGaaagaccttttaaatgttcgtaTTGCGATAGGATTTTTAGTCACTCTAGTAACTTGAATAAGCACGTGCGACtccatacgggcgagaagccttATAAGTGCTCGCTGTGCGATAAGGCCTTTACTCAGTCGAGTACTCTTAAGGCGCACTTGCGCACTCACCCAAGCGACGATCCTCTTTAA
- Protein Sequence
- MSRAVVGTCNWCLQGAPVERIEEGLWRFWKVISAEVSGPHGIFAGDPVVSHRDICEICNSRCRDFSMYIERCKTHSSVIDGILPGRRIKDGPTIDVEYDRLVIKEEERSNDEPTEPEGKASLECPHCSKSFTYPSSLRKHLRLHTGERPFECPVCGKAFAESSNLKRHSRIHTGEKRFRCPTCGKTFAEAVHLRNHARLHTGEKPFECSDCGKTFTQAGSLKSHVRVHTGEKPFGCPRCDKTFTASSTLKTHMRVHTGEKPFECSFCGKTFAESSTMKTHLRSHTGEKPYGCSLCDKSFTQSRVLKNHMCSHTGERPFGCPVCGKTFAKSSDLKRHLCVHTGERRFKCTVCGKTFIESGVLKRHMRFHTGERPFKCSYCDRIFSHSSNLNKHVRLHTGEKPYKCSLCDKAFTQSSTLKAHLRTHPSDDPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392898;
- 90% Identity
- iTF_00393247;
- 80% Identity
- iTF_00392898;