Coce006626.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776248.1:9549131-9551368[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-07 0.00016 22.0 0.0 1 38 17 54 17 59 0.86
Sequence Information
- Coding Sequence
- ATGGGCCGAGAAATAAAAGGGACTGCAGCTAGAAAAATAGGGGCCACCACCCAAGAGGATATGAGAAAAGCCGTAAATCTCCATATCAAAAATGGAGTCAGCATTCGAAAAGCAGCGAAAGAATGCCATATAGCGTACCCGACATTACGCAgatacgtaaaaaaatatttacaggaTAGCTCATCAGCTATGGAGCCAAATTatgctgtaaataaaatatttacctcTGAGCAAGAAGATGTACTACTTGAGTATATTGTGGATTGCTCCAATACATTTTATGGACTTTCTACCAAAGATTGCCGCCAAATAGCTTATCAGATGGCCGAAATCAACAACATATCTATGCCTTCAACAtgggtaacaaacaaaatagcTGGTAAGGACTGGTTACGAAATTTTCGAAGAAGACATCCTGGTATTTCGTTAAAGAAACCAGAAGCTTGCAGTGTAGCTAGGGCAACTGCCTTCAATCCTGTAAATGTTCAAAAATTTTATGACAACCTGAAGAATGTTCTTCAGCGTCATCCAAGTTTTGCAGATGGATCCAGGGTGTATAACTTGGACGAAACATCAACAACAACCGTTCAACGTCCTGGAAAAGTACTGGCACCAAAAGGGAGAAATGTTTGTAAAGTATCAAGCGGGGAGCGTGGAGTACTTGTCACAACATGCTGCATCGTTAATGCGATTGGGCAAGCTCTGCCACCAGTAATGGTGTTTCCTAggaaaaattttaaaagtcaTATGTTGTACGGCGCGCCCCCTGGTACTTTGGGCGTTGCTGCACCATCAGGATGGATGAATGGAGAACTATTTGTACAAGTTATGACTCACTTCATCAAACACACTGCAGCGTCAAAGGACCACCCGGCATTACTGATAATGGATAATCATGAAAGCCACCTTTCCTTGGAAGCACTTAACTTAGCAAAGGCGTCGGGAGTAATAGTTCTAACGCTCCACCCACACACAACAGCAAAATTACAACCTCTGGATGTAGGTTTGCTTGCACCCTTCAAGGCCTTGTATAATTCAGCTGTTGATTCGTGGCTGCTGCGGAACCCAGGGAGGCCCATGACTATTTACAATATCGCAGAATGCGTGGGACCTGCATATATGAAGTCAATGACTCCAACAAATATAGTCAACGCATTCAAAAAATGTGGAATATGTCCATTTAACGATCAATTATTTACCGAGACTGATTTCCTGCCGAGCACTGTGACTGATAGACCACAACCAGAAATTGAAAATGAGGAAGAATCAGACGTGACCGACGCAGAAGATGCTGTTGAGCATGATGAAAATTCTATAGATTTAAACAGGATGTGTGCCTCGCCATCTCTTTTGGATGATGACATGACTCCTCTGATCGAAAGAACTATGAAAGCAGGACTTAATCATATGgatgaaaatacaaaatctaGCACTTCTGCTGAGCCAACAACTGCTTCAGCAGAAGTTGAACATAATGAAGAAAACGTGCATCCAAGCAGTTGTATTAAACTATCAAGTGCTTCAACAGCAGTCGAACTGGATCACGCACAACCAAGCACTTCTAGAGCTGCAGAGAACTTTATATCTCCTAAGGCATTTCGTCAACCCCTGAAAGCAAAACCTCGAAAAACAATACGAAAAGCAGGAAGAAGCATAATTGCAACTGACACACCAGAAAAGGATGCCTTAGCTGCATTGAAAAGCAACAAAGATAAAGGAAAGAAGAGAAAAAGTGTAAAACATGTCAAGCTAAACTTATTCGATGAAgctaaaaaaggaaaaaaaagtaataaatccCCTGTAGCTTGTGATTCATCAGATGATGAGCAGGCAGTATTTGAGCCAAGTGGATCGTCCTCGGGTGGAGAACAATTTTGGAGTGATGCAGAAGACGAAGAAATTGTTTTGGATGATGATTTTCCACCAATGAATAAAGAGCCTATGCCCAATGATTATGTAATCATCCTGTTTAAAtccaaaaacataaatgtttaCTACGTAGCTAAAATTTTGGAGATactagatgatgatgatgagtgtgACTATTATGTGTCGTATCTGAAACTTAAAAGCAAAGCTCACCAAAAGTTTGTAGAACCAGTGATTCCTGACACAGCAGGAGTAGCCATGACAGACATTAAATATGTTTTGCCTGCTCCTAAATTTGAAGGAACTAGCCGCCGACAAGCTACTTTGAAATTTGCGGTTGACATGTCACTTCTAAATTTACGGTTTTAG
- Protein Sequence
- MGREIKGTAARKIGATTQEDMRKAVNLHIKNGVSIRKAAKECHIAYPTLRRYVKKYLQDSSSAMEPNYAVNKIFTSEQEDVLLEYIVDCSNTFYGLSTKDCRQIAYQMAEINNISMPSTWVTNKIAGKDWLRNFRRRHPGISLKKPEACSVARATAFNPVNVQKFYDNLKNVLQRHPSFADGSRVYNLDETSTTTVQRPGKVLAPKGRNVCKVSSGERGVLVTTCCIVNAIGQALPPVMVFPRKNFKSHMLYGAPPGTLGVAAPSGWMNGELFVQVMTHFIKHTAASKDHPALLIMDNHESHLSLEALNLAKASGVIVLTLHPHTTAKLQPLDVGLLAPFKALYNSAVDSWLLRNPGRPMTIYNIAECVGPAYMKSMTPTNIVNAFKKCGICPFNDQLFTETDFLPSTVTDRPQPEIENEEESDVTDAEDAVEHDENSIDLNRMCASPSLLDDDMTPLIERTMKAGLNHMDENTKSSTSAEPTTASAEVEHNEENVHPSSCIKLSSASTAVELDHAQPSTSRAAENFISPKAFRQPLKAKPRKTIRKAGRSIIATDTPEKDALAALKSNKDKGKKRKSVKHVKLNLFDEAKKGKKSNKSPVACDSSDDEQAVFEPSGSSSGGEQFWSDAEDEEIVLDDDFPPMNKEPMPNDYVIILFKSKNINVYYVAKILEILDDDDECDYYVSYLKLKSKAHQKFVEPVIPDTAGVAMTDIKYVLPAPKFEGTSRRQATLKFAVDMSLLNLRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00705941; iTF_01529130; iTF_01529131; iTF_01529132; iTF_01529133; iTF_00704942; iTF_00704943; iTF_00704944; iTF_00704945; iTF_00704946;
- 90% Identity
- -
- 80% Identity
- -