Xspa001454.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352223.1:211926-214109[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.4e-07 0.0007 19.5 0.0 5 38 21 54 20 58 0.82 2 3 0.19 1.8e+02 2.1 0.0 2 26 482 507 481 507 0.90 3 3 4.1 3.9e+03 -2.1 0.0 14 28 704 718 694 721 0.79
Sequence Information
- Coding Sequence
- ATGGGCCGTGTATTTAAAGGAATGGCCGCTAGAAAAATAGGGGCCACTTCTCAAGTAGAAATGAAAAAAGCCGTTGACCTACACATCAAGAATGGAGTGAGTATTCGAAAAGCATCGAGAGATTGCAAAATACCCTACCCCACTTTACGTAGATACGTAAAAAAGTATTTACAGGATAGCTCAGCAGTTTTAGAGccaaattatgcagtaaataaagtatttacatctgagcaagaagatgccctgcacgagtatattgtggactgttcaaataaattttatgggctatctaccaaagactgccgcagactagcttacgagatggcagaaatcaacaaaatttctatgccttcaacatgggtaacaaacaaaatggctggcaaggattggttgcaaaattttcgaaggagacatcccgatctttcgttaaagaaaccagaagcctgcagtgtggcaagagcaactgcttttaatcgtataaatgtaaaaaagttttatgacaacctcaaggatgtgcttcagcgtgatgcaagttttgcagatggatccagggtgtataacttagacgagacatcaacaacaaccgttcaacgccctggaaaaatattgacaccgaaagggcgaactgcttgtaaagtaactagcggagaacgaggagtgcttgttacaacttgctgcatcgttaatgcgattgggcaagctctgccacctgtaatggtttttcctagaaaaaactttaaagaccatatgttgtatggcgcaccccctggtacactgggcgttgctgcaccttcaggatggatgaatggagaactattcgtgcaagttatggctcacttcatcaaacatactgcagcgtcaaaggaccacccggcattacttattatggataatcacgaaagccacctatccttgcaagcacttgacctagcaaaggcatcgggagtaacaattctaacgctccacccacatacgactgcaaaaatgcaacctctagatgtaggtttgctggcacccttcaaggcctattataatggtgctgttgattcgtggctactgcggaatccagggaggcccatgactatttataatatcgcagaatgcgtgggtcctgcatatatgaagtcaatgaccccaacaaatatagtcaacgcatttaaaaaatgtggaatttttccatatgacgaccaattatttactgatgctgatttcctgccaagcactgtgaccgatagaccaCAACCAACAATCGAAATTGAGGAGGGATCGGACGTGACAGACGCAGAAGATGTTGCTGAGCATGATGAAAATTCGATGGATTGTAATAAAACCTGTGCCTCACCATCCCTTTTGTATGGAAACACAGCTCCTCTGATCGAAAATGATACGATAGCAGCAGTTAATTTGATGGAAGACTACACACAATCAAGCACTTCTGCTGAACCAACCACTTTTTCAACAGCAGTTGAACTGGTTGAAGATCATGAGCAACCAAGCACTTCTAGAGCTGCATCAAACTTTATATCTCCTAAAGTATTTTGCAAACCCCTGAAAGCAAAACCTCGAAAAACAATACGGAAAGCAGGAAGAAGCCTCATAGCAACTGACACGCCTGAAAAGGATGCCTTAGCTGCATTGAAAAACACCAAAAATAAAGGAAAGAAGATAAAAAACATTCAAGCAAAAAAAGTTAAGCAAGACTTATTCAATGAAGCTAAAAAGGTACGAAGAAATGAAAGGTCTGCTGTGGCTTCAGATTCATCCGATGATGAGCAGGCAGTATTTGAACCAAGCGGGTCATCGTCGGGCGGAGAACAATTTTGGAGCGATGCAGAAAAAGAAGAAGTTGTTTTGGATGACGATTTTCCACCATTGACTAAAAAGCCTGTGCCTAATGATTATGTAATTATCCTATTCAAATCCAAAAACATTAATGTTTACTACGTGGCCCAAATTTTAGAGAAGCTAGATGATGATGATTGTGACTATTATGTGTCATATCTGAAGCTTAAAAGCAAAGCTAATCAGAAGTTTGTCGAGCCAATAATTCCTGATACAGCAGGAGTAGCCACGTCAGAAATTAAATATGTTTTGCCTGCTCCTAAAGTCGACGGTACTACTAGTCGCCGACAAGCCACTTTAAAGTTTGACGTTGACATGTCGCTTCTAAATTTACGGTTTTAG
- Protein Sequence
- MGRVFKGMAARKIGATSQVEMKKAVDLHIKNGVSIRKASRDCKIPYPTLRRYVKKYLQDSSAVLEPNYAVNKVFTSEQEDALHEYIVDCSNKFYGLSTKDCRRLAYEMAEINKISMPSTWVTNKMAGKDWLQNFRRRHPDLSLKKPEACSVARATAFNRINVKKFYDNLKDVLQRDASFADGSRVYNLDETSTTTVQRPGKILTPKGRTACKVTSGERGVLVTTCCIVNAIGQALPPVMVFPRKNFKDHMLYGAPPGTLGVAAPSGWMNGELFVQVMAHFIKHTAASKDHPALLIMDNHESHLSLQALDLAKASGVTILTLHPHTTAKMQPLDVGLLAPFKAYYNGAVDSWLLRNPGRPMTIYNIAECVGPAYMKSMTPTNIVNAFKKCGIFPYDDQLFTDADFLPSTVTDRPQPTIEIEEGSDVTDAEDVAEHDENSMDCNKTCASPSLLYGNTAPLIENDTIAAVNLMEDYTQSSTSAEPTTFSTAVELVEDHEQPSTSRAASNFISPKVFCKPLKAKPRKTIRKAGRSLIATDTPEKDALAALKNTKNKGKKIKNIQAKKVKQDLFNEAKKVRRNERSAVASDSSDDEQAVFEPSGSSSGGEQFWSDAEKEEVVLDDDFPPLTKKPVPNDYVIILFKSKNINVYYVAQILEKLDDDDCDYYVSYLKLKSKANQKFVEPIIPDTAGVATSEIKYVLPAPKVDGTTSRRQATLKFDVDMSLLNLRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377051;
- 90% Identity
- iTF_01529130;
- 80% Identity
- -