Cpyr025087.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cosmia pyralina
Gene Symbol
-
Assembly
GCA_946251865.1
Location
CAMIUE010000930.1:92669-97268[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5e-05 0.0059 18.3 1.8 2 23 174 197 173 197 0.91
2 12 0.00015 0.018 16.8 1.8 1 23 200 222 200 222 0.97
3 12 0.0022 0.26 13.2 0.5 2 23 244 265 243 265 0.97
4 12 0.00054 0.064 15.1 4.5 2 20 273 291 272 294 0.93
5 12 1.2e-05 0.0014 20.4 0.8 1 23 300 322 300 322 0.98
6 12 5.8e-05 0.0068 18.2 3.7 1 23 328 350 328 350 0.97
7 12 1.8e-07 2.2e-05 26.0 1.3 1 23 356 378 356 378 0.96
8 12 0.00011 0.013 17.2 0.2 1 23 384 406 384 406 0.95
9 12 0.0023 0.27 13.1 6.8 1 23 412 434 412 434 0.97
10 12 0.079 9.2 8.3 7.4 1 23 440 462 440 462 0.98
11 12 4.4e-06 0.00052 21.7 3.2 1 23 468 490 468 490 0.98
12 12 6.9e-05 0.0082 17.9 1.5 1 23 496 518 496 518 0.97

Sequence Information

Coding Sequence
ATGGCgataaatttgaatttaaaaaactttGATTTGTGTTGTCGTACTTGCTTAGGAGATGTTTccgaaaaaatgtatgaaataattCAAGAAGGAATTGACTTAGTAAACATTGCTGAATTAATAACATCATATACTTCAATAGATGTGAACGTGAGCGACAGATTACCAACTAAGATATGCAATAGTTGCTACAGTTGCTTAGTAAACTTTCACAAATTCAAGATCACTGCATTAAATGCTGATGCTGAGTTGAGAGAACATTTTGCCCAAAACATTGGTGATGATAGCAAAGATGTAAGCATAAAGATAAAGCAAAATAACAACGTAGTTACTGAAATTAAACTTGAAGATGAATACCATCAATATCAAATTGAAAATAACTTAGATGATAGTGTTGATTCTGAAATGGCAGTTAAAGAAGAAATTGATCCATATAATATAGCAACAATGTATTCAGATATATCAGATGCAAGTCAACTTGAAGTACATCAAGCAAAACGCCAAAAAACAGAACTAAGATGTGAAGTTtgtgacaaaatttttaaatcacaGGCAAAATTAAACACCCACAAACgaaaatataaacataaacaatacaTCTGTAACATCTGCTCGAAGACTTTTAATTACAATTACAAATATGTCAAGCATTTGGTATCGCACAGATCAGATGCCGAAAGTAAATCCTATATGACCAAAGTTAACCATAATACAGACCAAAAAATACAATGTGACGTTTGTTCAGCGAATTTTAAGTCCGTGAACTCTTTATCTGCCCACAAAAGAAAACATGCATCGAAAGACAGAGTTCTATCATGTTCCATTTGCAGCAAGGTATTCAAAAAACTTTCCCACTTAAAAAGACATGAACTATGTCATGAGAATAATCGCCCATTCAAATGTTCTAAATGCCCAAAGTCATTTGCTACGGAAGTCACTTTAACAGAACATGAGAATAAGCACAATGGAATAAAACCTCATTGCTGTCCTATATGTCCAAAGTCTTTTGCTCATCTTTTGACGTTAACAAATCATATAAAGATTCATACAAGAGAAAAACCCTACTTATGTCCTACTTGTGGAAAGAGGTTTGATTCTAGCACTAACTTGAACCAGCATATGAAGAGGCATTTAGGATTGAAGCTATTTGCCTGTAACTTGTGTCCTCGGAAGTTTGTTAGTAAAGgTGAACTCAAATCCCATGGCGTGACCCATACAGGGGTGAAACCACACTCATGTGATCAATGTAATGCCACATTCACAAAGTGCAGTTCTCTGACCAAACATAAGCTGAGGCATCTGGGTATCAAAGCCTATCAGTGTGATGCTTGTCCGATGAAgtTCACGTGCAAACACCATCTGCAGCGGCACAACAGAATACATACTGGTGAAAGACCTCACCGATGTGACTTATGTGATCGAACTTTTACGCAAAGCAATGACTTGGTAAAGCATACGCGCTCACACTTAGGAATTAATCTGTATAAATGCGACCAATGCAGTCAAAGCTTCAGACTAAAGACGGAACTCCGCCAGCATATATCGGAACACTTCATTTCTTCACAACTGGAAGCGTTGAAAATGACTAACACAGACAAATCCCAAGCTCTGATTGCCAATAATGATTGTACAGTGAGAGTACCACAGGAAAACGTAGTGGTACAAAACAGTAATGATAAGATTATTCAATGA
Protein Sequence
MAINLNLKNFDLCCRTCLGDVSEKMYEIIQEGIDLVNIAELITSYTSIDVNVSDRLPTKICNSCYSCLVNFHKFKITALNADAELREHFAQNIGDDSKDVSIKIKQNNNVVTEIKLEDEYHQYQIENNLDDSVDSEMAVKEEIDPYNIATMYSDISDASQLEVHQAKRQKTELRCEVCDKIFKSQAKLNTHKRKYKHKQYICNICSKTFNYNYKYVKHLVSHRSDAESKSYMTKVNHNTDQKIQCDVCSANFKSVNSLSAHKRKHASKDRVLSCSICSKVFKKLSHLKRHELCHENNRPFKCSKCPKSFATEVTLTEHENKHNGIKPHCCPICPKSFAHLLTLTNHIKIHTREKPYLCPTCGKRFDSSTNLNQHMKRHLGLKLFACNLCPRKFVSKGELKSHGVTHTGVKPHSCDQCNATFTKCSSLTKHKLRHLGIKAYQCDACPMKFTCKHHLQRHNRIHTGERPHRCDLCDRTFTQSNDLVKHTRSHLGINLYKCDQCSQSFRLKTELRQHISEHFISSQLEALKMTNTDKSQALIANNDCTVRVPQENVVVQNSNDKIIQ