Basic Information

Insect: Lithophane ornitopus
Gene Symbol: -
Assembly: GCA_948473465.1
Location: OX419624.1:13183628-13187084[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.1e-05 0.0043 17.7 3.2 2 23 171 194 170 194 0.91

2 12 9e-05 0.0063 17.2 1.6 1 23 197 219 197 219 0.95

3 12 0.0017 0.12 13.2 0.5 2 23 241 262 240 262 0.97

4 12 0.00079 0.056 14.2 4.6 2 20 270 288 269 291 0.93

5 12 1.3e-05 0.0009 19.9 0.5 1 23 297 319 297 319 0.98

6 12 2.4e-06 0.00017 22.1 4.1 1 23 325 347 325 347 0.97

7 12 1.3e-07 9e-06 26.1 1.9 1 23 353 375 353 375 0.96

8 12 8.6e-05 0.0061 17.2 0.2 1 23 381 403 381 403 0.95

9 12 0.0018 0.12 13.1 6.7 1 23 409 431 409 431 0.97

10 12 9.5e-06 0.00067 20.3 2.4 1 23 437 459 437 459 0.98

11 12 2.5e-07 1.8e-05 25.2 1.7 1 23 465 487 465 487 0.99

12 12 0.00013 0.0095 16.6 1.2 1 23 493 515 493 515 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.1e-05	0.0043	17.7	3.2	2	23	171	194	170	194	0.91
2	12	9e-05	0.0063	17.2	1.6	1	23	197	219	197	219	0.95
3	12	0.0017	0.12	13.2	0.5	2	23	241	262	240	262	0.97
4	12	0.00079	0.056	14.2	4.6	2	20	270	288	269	291	0.93
5	12	1.3e-05	0.0009	19.9	0.5	1	23	297	319	297	319	0.98
6	12	2.4e-06	0.00017	22.1	4.1	1	23	325	347	325	347	0.97
7	12	1.3e-07	9e-06	26.1	1.9	1	23	353	375	353	375	0.96
8	12	8.6e-05	0.0061	17.2	0.2	1	23	381	403	381	403	0.95
9	12	0.0018	0.12	13.1	6.7	1	23	409	431	409	431	0.97
10	12	9.5e-06	0.00067	20.3	2.4	1	23	437	459	437	459	0.98
11	12	2.5e-07	1.8e-05	25.2	1.7	1	23	465	487	465	487	0.99
12	12	0.00013	0.0095	16.6	1.2	1	23	493	515	493	515	0.97

Sequence Information

Coding Sequence: ATGAATTTGAATTTAAAAACCTTTGATTTCTGTTGTCGTACTTGCTTACGAGATGTTTCCGAAGAAATGTATGAAATATTTCAAGAAGGAATTAATGTAGTAAATATTGCTGAATTAATAACATCATATACTTTAATACAGGTGAACATGGAGGACAGATTGCCAAAGAAGATATGCAATAGTTGCTATGGTTGTTTAGTAAACTTTCACGAATTTAAGATCACTGCATTAAATGCTGATGCTGAGTTGAGAGAGCATTTTGCCGAAATGATCGGTGATAGCAAAGATGTAAGCTTAAAGATACAGCATAATAACAACATGGTTACTGACATTAAAATTGAAGATGAATACAATCACTATCAAATTGAAAATAACTTAGATGATAGTGTTGATTCTGAAATGACAGTTAAAGGAGAAATTGATCCATATAATATAGCAGTAACGTATTCAGATATATCAGATGCAAGTCAAGTTGAAGTTCATCAAGCCAAACGCCAAAAAACAGAACTACAATGTGAAGTTTGTAATAAAATGTTTAAATCGCAAACAAAACTAAACACCCACAAAAGAAAATATAAACATAAACAATACATCTGTAATATCTGTTCAAAGACTTTTACTTACAATTACAAGTATGTCAAGCATTTGGTATTGCACAGATCAGATTCCGAAAGAAAATCTTACATGACCGAAATCAACCATAATACGGACCAAAAAATACAATGTGATGTTTGTTCAGCGAATTTCAAGTCCGTGAACTCTTTATCTGCCCACAAAAGAAAACATGCAACGAAAGACAGAGTTCTATCATGTTCAGTTTGCAGCAAGGTATTCAAAAAACTATCCCACTTAAAAAGACATGAACTATGTCATGAGAATAATCGCCCATTCAAATGTTCTAAATGCCCAAAGTCATTTGCTACGGAAGTCACTTTAATAGAACATGAGAATAAGCACAATGGAATAAAAGCTCATTGCTGTCCGATATGTCCAAAGTCTTTTGCTCATCTTTCGACGTTAACAAATCATATAAAGATTCATACAAGAGAAAAGCCCTTCTTATGTCCTACCTGCGGAAAGAGGTTTAATTCTAGCACTAACTTGAACCAGCATATGAAGCGGCATTCAGGATTGAAGTTATTTGCTTGTAACTTGTGTCCTAGGAAGTTTGTAAGTAAAGGTGAACTCAAATCCCATGGTGTGACCCATACAGGCGTGAAGCCACACTCATGTGATCAATGTAATGCAACATTCACAAAGTGCAGTTCTCTGAACAAACATAAGCTGAGGCACCTGGGCATCAAACCCTATCAGTGTGATGCTTGTCCGATGAAGTTCTCATCCAAAGACCACCTGAAGCGGCACAACAGAATACATACTGGTGAAAGACCTTACCGGTGTGACTTATGTGATCGAACTTTTACGCAAAGCACTGACTTGATAAAGCATACCCGCTCACACTTAGGAATTAATCTGTATAAATGCAATCAATGTGCCCAAAGCTTCAGACTCAAGACTGAACTCCGGCAGCATATATCGGAACACTTCATTTCTTCACAACTGGAAGCATTAAAAATGAGTAATACAGATAAACCGCAAGCCTTGATCGCCAGTAATGATAGTACAGTGAGAGTACCACAGGAAAATGGAGTGGTTCAAAACAGTATTGATAAGACTATTTAA
Protein Sequence: MNLNLKTFDFCCRTCLRDVSEEMYEIFQEGINVVNIAELITSYTLIQVNMEDRLPKKICNSCYGCLVNFHEFKITALNADAELREHFAEMIGDSKDVSLKIQHNNNMVTDIKIEDEYNHYQIENNLDDSVDSEMTVKGEIDPYNIAVTYSDISDASQVEVHQAKRQKTELQCEVCNKMFKSQTKLNTHKRKYKHKQYICNICSKTFTYNYKYVKHLVLHRSDSERKSYMTEINHNTDQKIQCDVCSANFKSVNSLSAHKRKHATKDRVLSCSVCSKVFKKLSHLKRHELCHENNRPFKCSKCPKSFATEVTLIEHENKHNGIKAHCCPICPKSFAHLSTLTNHIKIHTREKPFLCPTCGKRFNSSTNLNQHMKRHSGLKLFACNLCPRKFVSKGELKSHGVTHTGVKPHSCDQCNATFTKCSSLNKHKLRHLGIKPYQCDACPMKFSSKDHLKRHNRIHTGERPYRCDLCDRTFTQSTDLIKHTRSHLGINLYKCNQCAQSFRLKTELRQHISEHFISSQLEALKMSNTDKPQALIASNDSTVRVPQENGVVQNSIDKTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00374465;
90% Identity: iTF_01527579;
80% Identity: -