Basic Information

Insect: Luperina nickerlii
Gene Symbol: -
Assembly: GCA_963855955.1
Location: OY979678.1:5781670-5785042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.2e-05 0.0058 18.2 1.3 2 23 172 193 171 193 0.96

2 12 0.00014 0.016 16.8 2.2 1 23 196 218 196 218 0.97

3 12 0.0021 0.23 13.2 0.5 2 23 240 261 239 261 0.97

4 12 0.0014 0.15 13.7 4.5 2 20 269 287 268 290 0.93

5 12 6.3e-06 0.0007 21.1 0.7 1 23 296 318 296 318 0.98

6 12 3e-06 0.00033 22.1 4.1 1 23 324 346 324 346 0.97

7 12 1.7e-07 1.9e-05 26.0 1.3 1 23 352 374 352 374 0.96

8 12 0.00012 0.013 17.1 0.4 1 23 380 402 380 402 0.95

9 12 6.8e-05 0.0075 17.9 4.4 1 23 408 430 408 430 0.98

10 12 0.011 1.2 11.0 5.1 1 23 436 458 436 458 0.98

11 12 5.4e-07 6e-05 24.5 1.7 1 23 464 486 464 486 0.99

12 12 0.00017 0.019 16.6 1.2 1 23 492 514 492 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.2e-05	0.0058	18.2	1.3	2	23	172	193	171	193	0.96
2	12	0.00014	0.016	16.8	2.2	1	23	196	218	196	218	0.97
3	12	0.0021	0.23	13.2	0.5	2	23	240	261	239	261	0.97
4	12	0.0014	0.15	13.7	4.5	2	20	269	287	268	290	0.93
5	12	6.3e-06	0.0007	21.1	0.7	1	23	296	318	296	318	0.98
6	12	3e-06	0.00033	22.1	4.1	1	23	324	346	324	346	0.97
7	12	1.7e-07	1.9e-05	26.0	1.3	1	23	352	374	352	374	0.96
8	12	0.00012	0.013	17.1	0.4	1	23	380	402	380	402	0.95
9	12	6.8e-05	0.0075	17.9	4.4	1	23	408	430	408	430	0.98
10	12	0.011	1.2	11.0	5.1	1	23	436	458	436	458	0.98
11	12	5.4e-07	6e-05	24.5	1.7	1	23	464	486	464	486	0.99
12	12	0.00017	0.019	16.6	1.2	1	23	492	514	492	514	0.97

Sequence Information

Coding Sequence: atgaatttcaatttaaaaaacttTGATTTGTGTTGTCGTACTTGCTTACGAGATGTTTCTGAAGAAATGTttgaaatatttcacgaaggATTTGACTTAGTAAATATTGCTGAATTAATAACATCTTTTACTTCAATACAGgtGAATATGGAGGACGGGTTACCAAAGAAGATATGCAATAGTTGCTACAGTTGTTTAGTAAACTTTCACGAATTTAAAATCACTGCATTAAATGCTGATGCTGAGTTGAGAGAGCATTTTTCCCAAATTATTGGTGATAATAGCAAAGATGTAAGCATAAAGGTAAAGCataataataacttaattaCTGTAATTAAACTTGAAGACGAAtacaatcaatatcaaattgAAAATAACTTAGATGATAGTGTTGATTCTGAAATGGCAGTTAAAGAAGAAATTGACCCATATAATATAGCAACAATGTATTCTGATATATCTGACGCAAGTTACCTTGAAGTACAACAAGCAAAATGCCACAAAACAGAACTAATATGTGAAGTTtgtgataaaaattataaatcacAGACAAAACTAAACATCCATAAACGAAAACATAAACAATACATCTGTAATGTCTGTTCAAAGACTTTTACTTACAATTACAAATATCTCAAGCATTTGGTATCACACAAATCAGATCCCGAAAGTAATTCCTACATGACAGAAattaaccataatacagaccaAAAAATACAATGTGATGTTTGTTCAGCGAATTTCAAGTCTGTGAACTCTTTATCTGCTCACAAAAGGAAACATGCATCGAAAGACAGAGTTCTATCATGTTCAATTTGCAGCAAGATATTCAAAAAACTATCCCACTTAAAAAGACATGAACTATGTCACGAGAATAATCGCCCATTCAAATGTTCCAAATGCCCAAAGTCATTTGCTACAGAGGCTACTTTAACAGAACATGAGAATAAGCACAACGGAATAAAACCACATTGCTGTCCAATATGTCCAAAGTCTTTTGCTCATCTATCGACATTAACAAATCATATAAAGATCCATACCAGAGAAAAGCCCTATTTATGCCCTACTTGTGGAAAAAGGTTTGATTCAAGCACTAATTTGAACCAGCATATGAAGAGGCATTTAGGATTGAAGTTATTTGCCTGTAACTTGTGTCCGAGGAAGTTTGTAAGTAAAGGTGAACTCAAATCTCACAGCGTGACTCATACAGGCATGAAATCATACTCATGTGATCAATGTAATGCGACATTCACAAACTGCAGTTCTCTGACCAAACACAAGCTGAGGCATCTGGGTATCAAACCCTATCAATGTGATGCTTGTCCCATGAAgttCACATGCAAAGACCATCTGAAGAGGCACAACAGAATACATACTGGTGAAAGACCTTACCGGTGCGACCTATGTGATCGAACTTTTACACAAAGCACTGACTTGGTAAAACATACGCGCTCACACTTAGGAATTAATGTATATAAATGCAATCAATGTGCCCAAAGCTTCAGACTAAAGACGGAACTTCGCCAGCATATATCGGAACACTTCATTTCTTCACAATTGGAAGCATTGAAAATGAATAACACAGTTATACCTCCAACTGAGATCACCAGTAACGATTGTACAGCGAGGGAGCCACAGGAAAATGGAGTGGTTCAGAACAACAATGATAACTTCAAAACAACTGTCCAATGA
Protein Sequence: MNFNLKNFDLCCRTCLRDVSEEMFEIFHEGFDLVNIAELITSFTSIQVNMEDGLPKKICNSCYSCLVNFHEFKITALNADAELREHFSQIIGDNSKDVSIKVKHNNNLITVIKLEDEYNQYQIENNLDDSVDSEMAVKEEIDPYNIATMYSDISDASYLEVQQAKCHKTELICEVCDKNYKSQTKLNIHKRKHKQYICNVCSKTFTYNYKYLKHLVSHKSDPESNSYMTEINHNTDQKIQCDVCSANFKSVNSLSAHKRKHASKDRVLSCSICSKIFKKLSHLKRHELCHENNRPFKCSKCPKSFATEATLTEHENKHNGIKPHCCPICPKSFAHLSTLTNHIKIHTREKPYLCPTCGKRFDSSTNLNQHMKRHLGLKLFACNLCPRKFVSKGELKSHSVTHTGMKSYSCDQCNATFTNCSSLTKHKLRHLGIKPYQCDACPMKFTCKDHLKRHNRIHTGERPYRCDLCDRTFTQSTDLVKHTRSHLGINVYKCNQCAQSFRLKTELRQHISEHFISSQLEALKMNNTVIPPTEITSNDCTAREPQENGVVQNNNDNFKTTVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00374465;
90% Identity: iTF_00122654;
80% Identity: -