Basic Information

Insect: Oligia fasciuncula
Gene Symbol: -
Assembly: GCA_963082905.1
Location: OY720398.1:5254149-5262603[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-05 0.0046 18.3 1.3 2 23 150 171 149 171 0.96

2 12 0.00012 0.011 17.1 1.9 1 23 176 198 176 198 0.97

3 12 0.00066 0.059 14.8 0.6 2 23 220 241 219 241 0.97

4 12 0.0031 0.28 12.6 4.0 2 20 249 267 248 270 0.93

5 12 4.9e-05 0.0044 18.3 0.6 1 23 276 298 276 298 0.98

6 12 2.9e-06 0.00026 22.2 4.1 1 23 304 326 304 326 0.97

7 12 1.7e-07 1.5e-05 26.1 1.3 1 23 332 354 332 354 0.96

8 12 9.8e-05 0.0089 17.4 0.4 1 23 360 382 360 382 0.95

9 12 6.6e-05 0.0059 17.9 4.4 1 23 388 410 388 410 0.98

10 12 0.0027 0.25 12.8 6.2 1 23 416 438 416 438 0.98

11 12 5.2e-07 4.7e-05 24.5 1.7 1 23 444 466 444 466 0.99

12 12 0.00016 0.015 16.7 1.2 1 23 472 494 472 494 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-05	0.0046	18.3	1.3	2	23	150	171	149	171	0.96
2	12	0.00012	0.011	17.1	1.9	1	23	176	198	176	198	0.97
3	12	0.00066	0.059	14.8	0.6	2	23	220	241	219	241	0.97
4	12	0.0031	0.28	12.6	4.0	2	20	249	267	248	270	0.93
5	12	4.9e-05	0.0044	18.3	0.6	1	23	276	298	276	298	0.98
6	12	2.9e-06	0.00026	22.2	4.1	1	23	304	326	304	326	0.97
7	12	1.7e-07	1.5e-05	26.1	1.3	1	23	332	354	332	354	0.96
8	12	9.8e-05	0.0089	17.4	0.4	1	23	360	382	360	382	0.95
9	12	6.6e-05	0.0059	17.9	4.4	1	23	388	410	388	410	0.98
10	12	0.0027	0.25	12.8	6.2	1	23	416	438	416	438	0.98
11	12	5.2e-07	4.7e-05	24.5	1.7	1	23	444	466	444	466	0.99
12	12	0.00016	0.015	16.7	1.2	1	23	472	494	472	494	0.97

Sequence Information

Coding Sequence: AtgtttgaaatatttcaaaaaggAATTGACTTAGTAAATATTGCTGAATTAATAACGTCTTATACTTCAATACAGgtgaATATGGATGACGGGTTACCAAAGAAGATATGCAATAGTTGCTACAGTTGTTTATTAAACTTTCACGAATTTAAGATCACTGCATTAAATGCTGATGCTGAGTTGAGAGAGCATTTTTCCCAAACTATTGGTTTTAATAGCAAAGATGTGAGCATAAAGAAAAAgcataataataacttaattactGTAATTAAACTTGAAGACGAATACAATCAATATCAGATTGAAAACAACTTGGATGATAGTGTTGATTCTGAAATGGCAGTTAAAGAAGAAATTGACCCATATAATATAGCAGTAATGTATTCAGATATATCGGATGCAAGTCAACTTGAAGTACATCAAGCAAAACGCCAAAAAACAGAACTAATATGTGAAGTTTGTGATAAAAACTATAAATCACAAACAAAACTAAACATCCACAAACGAAAACATAAACTTAAACAATACATCTGTAATGTCTGTTCAAAGACTTTTACTTACAATTACAAATATGTCAAGCATTTGGTATCACACAAATCAGATCCCGAAAGTAAATCCTACATGACAGAAATTAACCATAATACAGACCAAAAAATACAATGTGATGTTTGTTCAGAGAATTTCAAGTCTGTGAACTCTTTATCTGCTCACAAAAGAAAACATGCATCGAAAGACAGAATTCTATCATGTTCAATTTGCAgcaagatatttaaaaaaatatcccaCTTAAAAAGACATGAACTATGTCATGAGAATAATCGCCCGTTCAAATGTTCTAAATGCCCAAAGTCATTCGCTATGGAAGCTACTTTAACAGAACATGAGAATAAGCACAACGGAATAAAACCCCATTGCTGTCCGATATGTCCAAAGTCTTTTGCTCATCTTTCAACATTAACAAATCATATAAAGATCCATACCAGAGAAAAGCCCTATTTATGCCCTACTTGTGGAAAGAGGTTTGATTCAAGCACTAATTTGAACCAGCATATGAAGAGGCATTTAGGATTGAAGTTATTTGCCTGTAACTTGTGTCCGAGGAGGTTTGTAAGTAAAGGTGAGCTCAAATCTCACAGCGTAACTCATACAGGCATGAAATCATACTCATGTGATCAATGTAATGCAACATTCACAAACTGCAGTTCTCTGACCAAACACAAGCTGAGGCATCTGGGTATTAAACCCTATCAATGTGATACTTGTCCCATGAAgttCACATGCAAAGACCATCTGAAGAGGCACAACAGAATACATACTGGTGAAAGACCTTACCGGTGCGACCTATGTGATCGAACTTTTACACAAAGCACTGACTTGGTAAAGCATACGCGCTCACACTTAGGAATTAATGTATATAAATGCAATCAATGTGCCCAAAGCTTCAGACTAAAGACTGAACTTCGCCAGCATATATCGGAACACTTCATTTCTTCACAATTGGAAGCATTAAAAATGAATAACACAGATAAACCTCCAGCTCTGATCACCAGTAATGATTGTACGGCGAGGGTGCCACAGGAAAATGGAGTGGTTCAGAACAACAATGATAACTTCAAAACAACTGTCCAATGA
Protein Sequence: MFEIFQKGIDLVNIAELITSYTSIQVNMDDGLPKKICNSCYSCLLNFHEFKITALNADAELREHFSQTIGFNSKDVSIKKKHNNNLITVIKLEDEYNQYQIENNLDDSVDSEMAVKEEIDPYNIAVMYSDISDASQLEVHQAKRQKTELICEVCDKNYKSQTKLNIHKRKHKLKQYICNVCSKTFTYNYKYVKHLVSHKSDPESKSYMTEINHNTDQKIQCDVCSENFKSVNSLSAHKRKHASKDRILSCSICSKIFKKISHLKRHELCHENNRPFKCSKCPKSFAMEATLTEHENKHNGIKPHCCPICPKSFAHLSTLTNHIKIHTREKPYLCPTCGKRFDSSTNLNQHMKRHLGLKLFACNLCPRRFVSKGELKSHSVTHTGMKSYSCDQCNATFTNCSSLTKHKLRHLGIKPYQCDTCPMKFTCKDHLKRHNRIHTGERPYRCDLCDRTFTQSTDLVKHTRSHLGINVYKCNQCAQSFRLKTELRQHISEHFISSQLEALKMNNTDKPPALITSNDCTARVPQENGVVQNNNDNFKTTVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00374465;
90% Identity: iTF_00122654;
80% Identity: -